C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008RM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs97 VISTA 9606 16:17846504-18447239
GeneTranscriptPositionBiotype
ENSG00000185164 (NOMO2)
NODAL modulator 2 		ENST00000330537 (NOMO2-001) 18417325-18562211 protein_coding
ENST00000381474 (NOMO2-002) 18417330-18562106 protein_coding
ENST00000543392 (NOMO2-201) 18499936-18562074 protein_coding
ENST00000562312 (NOMO2-004) 18551473-18562176 nonsense_mediated_decay
ENST00000564355 (NOMO2-005) 18538630-18542942 retained_intron
ENST00000564991 (NOMO2-003) 18417337-18562074 nonsense_mediated_decay
ENST00000567831 (NOMO2-006) 18520820-18529547 nonsense_mediated_decay
ENST00000569051 (NOMO2-007) 18520899-18533102 nonsense_mediated_decay
ENST00000569526 (NOMO2-008) 18418432-18424765 retained_intron
ENST00000620440 (NOMO2-202) 18417326-18433412 protein_coding
ENST00000621364 (NOMO2-203) 18499925-18562112 protein_coding
ENST00000622306 (NOMO2-204) 18499925-18562112 protein_coding
ENSG00000205746 (RP11-1212A22.1)
 ENST00000433020 (RP11-1212A22.1-004) 18343424-18344168 processed_transcript
ENST00000525846 (RP11-1212A22.1-001) 18334400-18352476 transcribed_unprocessed_pseudogene
ENST00000535716 (RP11-1212A22.1-003) 18344140-18346148 processed_transcript
ENST00000538220 (RP11-1212A22.1-005) 18341735-18343638 processed_transcript
ENST00000539740 (RP11-1212A22.1-002) 18344140-18346318 processed_transcript
ENST00000545152 (RP11-1212A22.1-006) 18341622-18343097 processed_transcript
ENSG00000214940 (NPIPA8)
nuclear pore complex interacting protein family, member A8 		ENST00000525596 (NPIPA8-001) 18317942-18336736 protein_coding
ENST00000541810 (NPIPA8-201) 18317947-18332662 protein_coding
ENST00000545050 (NPIPA8-002) 18319258-18324235 protein_coding
ENSG00000228071 (RPL7P47)
ribosomal protein L7 pseudogene 47 		ENST00000497299 (RPL7P47-001) 17932720-17933275 processed_pseudogene
ENSG00000254681 (PKD1P5)
polycystic kidney disease 1 (autosomal dominant) pseudogene 5 		ENST00000532415 (PKD1P5-001) 18374521-18401940 transcribed_unprocessed_pseudogene
ENST00000538166 (PKD1P5-005) 18383471-18385229 processed_transcript
ENST00000542593 (PKD1P5-003) 18383366-18390919 processed_transcript
ENST00000544578 (PKD1P5-002) 18394972-18401925 processed_transcript
ENST00000545364 (PKD1P5-006) 18382707-18384504 processed_transcript
ENST00000545970 (PKD1P5-004) 18385851-18389833 processed_transcript
ENSG00000257527 (MIR3179-3)
 ENST00000552753 (MIR3179-3-001) 18411309-18411851 lincRNA
ENSG00000257563 (MIR3180-3)
microRNA 3180-3 		ENST00000549796 (MIR3180-3-001) 18402146-18403604 lincRNA
ENSG00000259929 (CTA-481E9.4)
 ENST00000567304 (CTA-481E9.4-002) 17967393-18151595 lincRNA
ENST00000569048 (CTA-481E9.4-001) 17933189-17972542 lincRNA
ENSG00000260242 (CTA-481E9.3)
 ENST00000563866 (CTA-481E9.3-001) 18002806-18173063 lincRNA
ENSG00000278994 (CTD-2036A2.1)
 ENST00000624475 (CTD-2036A2.1-001) 18201501-18201956 TEC
ENSG00000280283 (CTA-481E9.2)
 ENST00000623060 (CTA-481E9.2-001) 17961597-17962370 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0008RM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs97 VISTA 10090 7:116387002-116987715
GeneTranscriptPositionBiotype
ENSMUSG00000030659 (Nucb2)
nucleobindin 2 		ENSMUST00000032895 (Nucb2-001) 116504369-116540554 protein_coding
ENSMUST00000182767 (Nucb2-003) 116504384-116509601 processed_transcript
ENSMUST00000183175 (Nucb2-002) 116504415-116540443 protein_coding
ENSMUST00000183335 (Nucb2-004) 116528812-116536033 nonsense_mediated_decay
ENSMUSG00000030660 (Pik3c2a)
phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide 		ENSMUST00000170430 (Pik3c2a-201) 116337276-116443458 protein_coding
ENSMUSG00000084492 (n-R5s157)
nuclear encoded rRNA 5S 157 		ENSMUST00000122543 (n-R5s157-201) 116625122-116625242 rRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008RM_0001ENSG00000185164ENST00000330537ENST00000381474ENST00000543392ENST00000562312ENST00000564355ENST00000564991ENST00000567831ENST00000569051ENST00000569526ENST00000620440ENST00000621364ENST00000622306ENSG00000205746ENST00000433020ENST00000525846ENST00000535716ENST00000538220ENST00000539740ENST00000545152ENSG00000214940ENST00000525596ENST00000541810ENST00000545050ENSG00000228071ENST00000497299ENSG00000254681ENST00000532415ENST00000538166ENST00000542593ENST00000544578ENST00000545364ENST00000545970ENSG00000257527ENST00000552753ENSG00000257563ENST00000549796ENSG00000259929ENST00000567304ENST00000569048ENSG00000260242ENST00000563866ENSG00000278994ENST00000624475ENSG00000280283ENST00000623060CIL_0008RM_0002ENSMUSG00000030659ENSMUST00000032895ENSMUST00000182767ENSMUST00000183175ENSMUST00000183335ENSMUSG00000030660ENSMUST00000170430ENSMUSG00000084492ENSMUST00000122543
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008RM_0001ENSG00000185164ENST00000330537ENST00000381474ENST00000543392ENST00000562312ENST00000564991ENST00000569051ENST00000621364ENST00000622306ENSG00000205746ENST00000433020ENST00000525846ENST00000535716ENST00000545152ENSG00000214940ENST00000525596ENSG00000228071ENST00000497299ENSG00000254681ENST00000532415ENST00000538166ENST00000545364ENST00000545970ENSG00000257527ENST00000552753ENSG00000257563ENST00000549796ENSG00000259929ENST00000567304ENST00000569048ENSG00000260242ENST00000563866ENSG00000278994ENST00000624475ENSG00000280283ENST00000623060CIL_0008RM_0002ENSMUSG00000030659ENSMUST00000032895ENSMUST00000182767ENSMUST00000183175ENSMUST00000183335ENSMUSG00000030660ENSMUST00000170430ENSMUSG00000084492ENSMUST00000122543
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000185164 ENST00000330537 N/A N/A N/A 0.392±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000381474 N/A N/A N/A N/A N/A N/A 0.380±0.00 N/A N/A 0.871±0.00 N/A 0.468±0.00 N/A N/A
ENST00000543392 1.072±0.00 0.381±0.00 0.185±0.00 0.634±0.28 0.671±0.06 0.592±0.11 1.072±0.30 0.570±0.21 0.472±0.32 0.492±0.27 0.853±0.67 0.400±0.18 1.422±0.15 0.436±0.02
ENST00000562312 N/A N/A 0.418±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564991 1.072±0.00 0.381±0.00 0.185±0.00 0.634±0.28 0.671±0.06 0.592±0.11 0.894±0.48 0.570±0.21 0.472±0.32 0.492±0.27 0.853±0.67 0.400±0.18 1.422±0.15 0.436±0.02
ENST00000567831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569051 N/A 0.698±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621364 N/A N/A N/A 0.733±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622306 N/A N/A N/A N/A N/A N/A N/A N/A 0.559±0.00 N/A N/A N/A N/A N/A
ENSG00000205746 ENST00000433020 0.448±0.00 0.348±0.00 N/A 0.389±0.00 0.673±0.00 1.344±0.88 0.250±0.00 0.196±0.00 0.074±0.00 0.710±0.00 0.872±0.00 N/A 0.447±0.00 0.864±0.00
ENST00000525846 0.029±0.00 N/A N/A 0.078±0.02 0.120±0.01 0.102±0.04 0.024±0.02 0.015±0.00 0.012±0.00 0.121±0.00 0.055±0.00 0.122±0.16 0.062±0.05 0.114±0.03
ENST00000535716 0.437±0.00 0.596±0.00 N/A 0.563±0.19 0.782±0.17 0.558±0.26 0.159±0.01 0.129±0.00 0.332±0.28 N/A 2.223±0.00 1.274±0.76 0.855±0.00 2.045±1.13
ENST00000538220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545152 N/A 0.426±0.00 2.960±0.00 0.449±0.08 1.953±0.00 0.723±0.00 0.311±0.14 0.618±0.42 1.071±0.96 2.802±1.89 1.470±0.00 0.502±0.39 0.427±0.03 0.585±0.00
ENSG00000214940 ENST00000525596 0.119±0.00 0.037±0.00 N/A N/A 0.047±0.00 0.053±0.00 N/A 0.046±0.00 N/A N/A N/A 0.020±0.00 0.017±0.00 N/A
ENST00000541810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228071 ENST00000497299 0.291±0.00 0.302±0.00 N/A 0.127±0.00 0.274±0.15 0.817±0.00 0.089±0.00 0.178±0.00 0.091±0.05 0.208±0.00 0.389±0.00 0.599±0.72 0.582±0.69 0.271±0.02
ENSG00000254681 ENST00000532415 N/A 0.005±0.00 N/A 0.063±0.05 0.170±0.00 0.039±0.00 N/A 0.023±0.00 0.036±0.00 0.124±0.09 0.019±0.00 0.082±0.06 0.022±0.00 0.229±0.09
ENST00000538166 N/A N/A N/A 0.405±0.00 0.512±0.00 N/A N/A N/A N/A N/A 0.325±0.00 N/A N/A N/A
ENST00000542593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545364 N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A N/A
ENST00000545970 N/A N/A N/A N/A N/A 0.395±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257527 ENST00000552753 0.082±0.00 N/A N/A 0.066±0.04 0.103±0.02 0.025±0.00 0.568±0.00 0.221±0.00 0.772±0.00 0.076±0.00 N/A 0.111±0.05 0.133±0.07 0.062±0.00
ENSG00000257563 ENST00000549796 N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A 0.013±0.00
ENSG00000259929 ENST00000567304 0.085±0.00 0.129±0.00 N/A 0.152±0.00 0.271±0.00 N/A 0.219±0.00 0.147±0.00 0.094±0.00 N/A N/A N/A N/A 0.265±0.15
ENST00000569048 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A N/A N/A
ENSG00000260242 ENST00000563866 N/A N/A N/A 0.034±0.00 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A 0.058±0.00
ENSG00000278994 ENST00000624475 0.089±0.00 0.267±0.00 N/A 0.156±0.00 0.145±0.00 0.108±0.00 0.055±0.00 N/A 0.155±0.00 0.103±0.00 N/A 0.055±0.00 N/A 0.396±0.04
ENSG00000280283 ENST00000623060 0.087±0.00 N/A N/A 0.019±0.00 N/A N/A 0.139±0.00 0.202±0.00 N/A N/A N/A 0.084±0.00 N/A 0.054±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030659 ENSMUST00000032895 3.151±0.56 0.711±0.15 11.336±0.14 11.934±11.65 2.665±0.58 1.244±0.80 1.080±0.20 1.899±0.40 1.391±0.86 6.920±1.46 1.122±0.13 11.135±15.13 79.503±82.72 17.241±25.99
ENSMUST00000182767 N/A 0.254±0.06 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183175 N/A 0.602±0.00 N/A N/A N/A 0.527±0.30 N/A N/A 0.157±0.00 N/A N/A 2.025±0.00 N/A N/A
ENSMUST00000183335 N/A N/A N/A N/A N/A 0.425±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030660 ENSMUST00000170430 3.426±1.15 1.227±0.44 3.098±1.11 2.624±1.20 2.144±1.47 2.164±0.75 1.118±0.19 3.726±0.38 1.707±0.26 3.671±0.65 0.478±0.20 3.087±1.61 6.180±2.31 1.948±0.99
ENSMUSG00000084492 ENSMUST00000122543 N/A N/A N/A N/A N/A N/A 1020.280±0.00 N/A N/A N/A N/A N/A N/A N/A

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