C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008RR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm506 VISTA 9606 14:33972978-34576380
GeneTranscriptPositionBiotype
ENSG00000129515 (SNX6)
sorting nexin 6 		ENST00000362031 (SNX6-002) 34562409-34630183 protein_coding
ENST00000396526 (SNX6-001) 34561094-34630109 protein_coding
ENST00000555416 (SNX6-004) 34567892-34630154 nonsense_mediated_decay
ENST00000555541 (SNX6-010) 34575591-34586316 retained_intron
ENST00000555648 (SNX6-009) 34605682-34629672 protein_coding
ENST00000556162 (SNX6-003) 34562660-34630158 nonsense_mediated_decay
ENST00000556303 (SNX6-007) 34605487-34630154 retained_intron
ENST00000556712 (SNX6-008) 34586230-34630133 nonsense_mediated_decay
ENST00000557265 (SNX6-005) 34586230-34630158 protein_coding
ENST00000557341 (SNX6-006) 34603365-34630153 nonsense_mediated_decay
ENSG00000129518 (EAPP)
E2F-associated phosphoprotein 		ENST00000250454 (EAPP-001) 34515929-34539710 protein_coding
ENST00000554792 (EAPP-004) 34516490-34536445 protein_coding
ENST00000555683 (EAPP-003) 34535864-34539704 retained_intron
ENST00000555705 (EAPP-005) 34529356-34539698 nonsense_mediated_decay
ENST00000618169 (EAPP-201) 34516012-34539711 protein_coding
ENSG00000129521 (EGLN3)
egl-9 family hypoxia-inducible factor 3 		ENST00000250457 (EGLN3-001) 33924231-33951081 protein_coding
ENST00000464521 (EGLN3-003) 34126253-34169766 processed_transcript
ENST00000487915 (EGLN3-006) 33929099-34222877 protein_coding
ENST00000546681 (EGLN3-009) 34096163-34227814 processed_transcript
ENST00000547327 (EGLN3-005) 33948233-33951081 protein_coding
ENST00000548285 (EGLN3-002) 34092317-34222953 processed_transcript
ENST00000550114 (EGLN3-010) 33985153-34018655 processed_transcript
ENST00000551935 (EGLN3-011) 33985381-34462774 processed_transcript
ENST00000553215 (EGLN3-004) 33925399-33950826 protein_coding
ENST00000556785 (EGLN3-013) 33925511-33931336 retained_intron
ENST00000557521 (EGLN3-012) 34127029-34130044 processed_transcript
ENSG00000165389 (SPTSSA)
serine palmitoyltransferase, small subunit A 		ENST00000298130 (SPTSSA-001) 34432789-34462356 protein_coding
ENSG00000223593 (AL356806.3)
 ENST00000422524 (AL356806.3-001) 34416687-34417602 processed_pseudogene
ENSG00000237450 (RP11-671J11.1)
 ENST00000470966 (RP11-671J11.1-001) 34485979-34486447 processed_pseudogene
ENSG00000240463 (RPS19P3)
ribosomal protein S19 pseudogene 3 		ENST00000480487 (RPS19P3-001) 34568689-34569129 processed_pseudogene
ENSG00000258897 (EGLN3-AS1)
EGLN3 antisense RNA 1 		ENST00000555922 (EGLN3-AS1-001) 34040097-34059300 antisense
ENSG00000259002 (RP11-671J11.7)
 ENST00000553697 (RP11-671J11.7-001) 34541817-34542444 lincRNA
ENST00000623749 (RP11-671J11.7-002) 34541740-34546329 lincRNA
ENSG00000265244 (AL358340.1)
 ENST00000583762 (AL358340.1-201) 33977310-33977391 miRNA
CIL_0008RR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm506 VISTA 10090 12:54232609-54834941
GeneTranscriptPositionBiotype
ENSMUSG00000005656 (Snx6)
sorting nexin 6 		ENSMUST00000005798 (Snx6-201) 54746349-54795703 protein_coding
ENSMUSG00000044408 (Sptssa)
serine palmitoyltransferase, small subunit A 		ENSMUST00000056228 (Sptssa-201) 54645374-54656572 protein_coding
ENSMUSG00000054302 (Eapp)
E2F-associated phosphoprotein 		ENSMUST00000067272 (Eapp-003) 54673471-54695897 protein_coding
ENSMUST00000110713 (Eapp-002) 54673466-54695821 protein_coding
ENSMUST00000160085 (Eapp-004) 54690111-54695862 protein_coding
ENSMUST00000161592 (Eapp-001) 54670340-54695881 protein_coding
ENSMUST00000162106 (Eapp-005) 54685927-54695843 protein_coding
ENSMUST00000163433 (Eapp-201) 54671655-54695884 protein_coding
ENSMUSG00000072255 (Rpl31-ps17)
ribosomal protein L31, pseudogene 17 		ENSMUST00000097040 (Rpl31-ps17-001) 54701329-54701706 processed_pseudogene
ENSMUSG00000093815 (Gm26444)
predicted gene, 26444 		ENSMUST00000178333 (Gm26444-201) 54729602-54729765 snRNA
ENSMUSG00000094826 (Gm23804)
predicted gene, 23804 		ENSMUST00000179675 (Gm23804-201) 54714218-54714381 snRNA
ENSMUSG00000095590 (Gm24305)
predicted gene, 24305 		ENSMUST00000179155 (Gm24305-201) 54734555-54734718 snRNA
ENSMUSG00000096206 (Gm22317)
predicted gene, 22317 		ENSMUST00000178469 (Gm22317-201) 54738459-54738622 snRNA
ENSMUSG00000096214 (Gm22634)
predicted gene, 22634 		ENSMUST00000177653 (Gm22634-201) 54710308-54710471 snRNA
ENSMUSG00000096349 (Gm22513)
predicted gene, 22513 		ENSMUST00000179621 (Gm22513-201) 54696782-54696945 snRNA
ENSMUSG00000096659 (Gm25679)
predicted gene, 25679 		ENSMUST00000101973 (Gm25679-201) 54719163-54719326 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008RR_0001ENSG00000129515ENST00000362031ENST00000396526ENST00000555416ENST00000555541ENST00000555648ENST00000556162ENST00000556303ENST00000556712ENST00000557265ENST00000557341ENSG00000129518ENST00000250454ENST00000554792ENST00000555683ENST00000555705ENST00000618169ENSG00000129521ENST00000250457ENST00000464521ENST00000487915ENST00000546681ENST00000547327ENST00000548285ENST00000550114ENST00000551935ENST00000553215ENST00000556785ENST00000557521ENSG00000165389ENST00000298130ENSG00000223593ENST00000422524ENSG00000237450ENST00000470966ENSG00000240463ENST00000480487ENSG00000258897ENST00000555922ENSG00000259002ENST00000553697ENST00000623749ENSG00000265244ENST00000583762CIL_0008RR_0002ENSMUSG00000005656ENSMUST00000005798ENSMUSG00000044408ENSMUST00000056228ENSMUSG00000054302ENSMUST00000067272ENSMUST00000110713ENSMUST00000160085ENSMUST00000161592ENSMUST00000162106ENSMUST00000163433ENSMUSG00000072255ENSMUST00000097040ENSMUSG00000093815ENSMUST00000178333ENSMUSG00000094826ENSMUST00000179675ENSMUSG00000095590ENSMUST00000179155ENSMUSG00000096206ENSMUST00000178469ENSMUSG00000096214ENSMUST00000177653ENSMUSG00000096349ENSMUST00000179621ENSMUSG00000096659ENSMUST00000101973
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008RR_0001ENSG00000129515ENST00000362031ENST00000396526ENST00000556162ENST00000557265ENSG00000129518ENST00000250454ENST00000554792ENST00000555683ENST00000555705ENST00000618169ENSG00000129521ENST00000250457ENST00000547327ENST00000553215ENST00000556785ENSG00000165389ENST00000298130ENSG00000223593ENST00000422524ENSG00000237450ENST00000470966ENSG00000240463ENST00000480487ENSG00000258897ENST00000555922ENSG00000259002ENST00000553697ENSG00000265244ENST00000583762CIL_0008RR_0002ENSMUSG00000005656ENSMUST00000005798ENSMUSG00000044408ENSMUST00000056228ENSMUSG00000054302ENSMUST00000067272ENSMUST00000110713ENSMUST00000160085ENSMUST00000161592ENSMUST00000162106ENSMUST00000163433ENSMUSG00000072255ENSMUST00000097040ENSMUSG00000093815ENSMUST00000178333ENSMUSG00000094826ENSMUST00000179675ENSMUSG00000095590ENSMUST00000179155ENSMUSG00000096206ENSMUST00000178469ENSMUSG00000096214ENSMUST00000177653ENSMUSG00000096349ENSMUST00000179621ENSMUSG00000096659ENSMUST00000101973
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129515 ENST00000362031 11.921±0.00 9.327±0.00 3.092±0.00 7.880±0.43 12.003±1.49 9.323±2.47 8.083±4.69 11.735±9.48 5.346±1.42 8.348±1.51 6.616±0.00 11.745±4.50 14.428±3.97 13.660±2.21
ENST00000396526 N/A N/A N/A 2.559±0.00 N/A N/A N/A 1.270±0.00 N/A N/A N/A 11.073±6.50 7.677±0.00 11.597±0.00
ENST00000555416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556162 N/A N/A N/A N/A N/A N/A 2.363±0.00 1.009±0.00 N/A N/A 2.486±0.00 N/A N/A N/A
ENST00000556303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.892±0.00 N/A N/A
ENST00000557341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000129518 ENST00000250454 6.255±0.00 6.213±0.00 2.317±0.00 4.419±3.21 4.540±0.00 3.995±0.00 3.306±0.00 7.857±2.72 2.249±0.74 4.375±0.02 2.913±1.30 19.014±9.96 13.079±7.11 6.398±4.12
ENST00000554792 N/A N/A N/A N/A 2.887±0.00 N/A 1.495±0.00 N/A 2.607±0.00 1.385±0.00 0.740±0.00 4.330±0.00 4.810±0.00 1.878±0.00
ENST00000555683 N/A N/A N/A 3.856±0.00 2.862±0.00 5.355±0.00 1.852±0.00 N/A 5.429±0.00 N/A 1.536±0.00 N/A N/A N/A
ENST00000555705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.837±0.00 N/A 3.159±0.00
ENST00000618169 N/A N/A N/A N/A N/A 2.152±0.00 N/A 5.864±0.00 1.212±0.00 N/A N/A 3.961±0.00 N/A 7.404±0.00
ENSG00000129521 ENST00000250457 2.533±0.00 4.448±0.00 1.312±0.00 4.335±1.06 1.301±0.71 2.483±1.19 9.990±6.80 0.730±0.48 3.359±3.27 0.938±0.12 1.248±0.66 2.420±1.19 10.813±4.56 0.997±0.63
ENST00000464521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547327 0.524±0.00 N/A 0.392±0.00 0.792±0.00 0.371±0.00 0.953±0.44 1.427±0.00 N/A 2.807±0.00 0.979±0.56 N/A 1.104±0.90 2.521±1.20 0.101±0.00
ENST00000548285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553215 3.164±0.00 5.663±0.00 N/A 9.883±0.00 0.945±0.00 11.468±0.00 24.557±0.00 3.393±0.00 0.363±0.00 4.712±0.00 4.469±0.00 1.808±0.64 N/A 2.099±1.88
ENST00000556785 N/A N/A N/A 4.422±0.00 1.444±0.00 4.303±0.00 4.937±0.00 N/A 3.703±3.61 2.590±0.00 0.415±0.00 N/A N/A N/A
ENST00000557521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165389 ENST00000298130 8.705±0.00 6.352±0.00 1.068±0.00 5.583±4.01 6.542±3.67 10.117±5.13 3.403±2.34 8.208±4.42 6.263±3.10 11.227±4.54 2.593±0.67 14.857±3.55 11.807±3.80 5.328±4.10
ENSG00000223593 ENST00000422524 N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A
ENSG00000237450 ENST00000470966 0.076±0.00 0.042±0.00 N/A 0.044±0.00 N/A N/A N/A N/A N/A N/A 0.037±0.00 0.074±0.00 N/A 0.054±0.00
ENSG00000240463 ENST00000480487 0.677±0.00 2.353±0.00 2.724±0.00 0.596±0.00 2.673±1.34 0.856±0.57 0.492±0.27 0.123±0.00 0.997±0.78 1.085±0.52 1.541±1.39 1.406±1.06 0.349±0.00 0.508±0.03
ENSG00000258897 ENST00000555922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.649±0.00 N/A
ENSG00000259002 ENST00000553697 0.140±0.00 0.057±0.00 N/A 0.123±0.00 0.058±0.00 0.107±0.00 0.053±0.00 0.086±0.00 N/A 0.207±0.00 N/A 0.046±0.00 N/A 0.026±0.00
ENST00000623749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265244 ENST00000583762 N/A 0.534±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005656 ENSMUST00000005798 10.710±1.45 5.448±2.94 26.336±2.66 21.621±6.83 7.163±1.04 6.466±1.76 4.695±0.49 20.884±2.65 9.466±6.25 7.721±0.90 6.584±0.75 14.180±12.36 54.621±19.95 3.266±1.28
ENSMUSG00000044408 ENSMUST00000056228 62.183±12.61 240.399±20.71 44.638±6.82 28.061±18.30 56.339±22.43 78.922±29.98 19.518±4.55 57.583±3.68 62.047±26.77 83.047±21.21 11.246±1.33 111.498±52.50 19.084±10.63 15.092±6.77
ENSMUSG00000054302 ENSMUST00000067272 N/A N/A N/A N/A 4.895±0.00 8.346±3.21 4.756±0.00 7.941±2.96 9.097±1.35 5.617±0.00 N/A 5.159±1.17 N/A 21.902±4.22
ENSMUST00000110713 N/A N/A N/A 10.471±0.00 N/A N/A N/A N/A N/A N/A 3.487±0.63 13.045±3.91 16.640±9.46 52.393±0.00
ENSMUST00000160085 N/A 28.747±4.14 N/A N/A 5.919±0.00 8.078±1.52 N/A N/A 6.302±0.00 5.714±0.00 N/A 6.329±1.53 N/A N/A
ENSMUST00000161592 0.593±0.14 N/A 2.083±0.50 1.772±0.59 0.864±0.19 0.694±0.20 0.507±0.18 0.991±0.43 1.195±0.64 1.257±0.25 0.677±0.00 0.892±0.41 1.216±0.52 N/A
ENSMUST00000162106 N/A 38.182±0.00 N/A N/A N/A N/A N/A N/A 10.525±3.57 N/A N/A 15.463±0.00 20.872±1.78 25.035±0.00
ENSMUST00000163433 4.957±0.07 4.411±0.99 8.101±0.17 5.616±1.14 4.258±1.06 3.161±0.82 3.239±0.17 4.511±0.50 3.133±1.07 5.978±1.01 2.366±0.63 4.999±1.28 4.833±1.46 4.566±2.50
ENSMUSG00000072255 ENSMUST00000097040 0.528±0.06 N/A 0.294±0.01 0.067±0.06 N/A N/A N/A 0.161±0.01 0.190±0.12 N/A 0.181±0.00 0.958±0.07 0.300±0.13 0.150±0.01
ENSMUSG00000093815 ENSMUST00000178333 N/A N/A 51.809±0.00 99.473±0.00 N/A N/A N/A N/A 94.448±49.80 N/A N/A N/A N/A N/A
ENSMUSG00000094826 ENSMUST00000179675 N/A N/A 8.032±0.00 96.816±0.00 N/A N/A N/A N/A 18.612±8.37 N/A N/A N/A N/A N/A
ENSMUSG00000095590 ENSMUST00000179155 N/A N/A 2.348±0.00 3.329±0.83 N/A N/A N/A N/A 12.979±8.11 N/A 0.961±0.00 N/A 4.749±0.37 49.453±16.62
ENSMUSG00000096206 ENSMUST00000178469 N/A N/A 8.032±0.00 98.055±0.00 N/A N/A N/A N/A 24.089±9.94 N/A N/A N/A N/A N/A
ENSMUSG00000096214 ENSMUST00000177653 N/A N/A 8.032±0.00 100.004±0.00 N/A N/A N/A N/A 29.423±7.39 N/A N/A N/A N/A N/A
ENSMUSG00000096349 ENSMUST00000179621 413.034±101.21 34.373±0.00 53.792±0.00 42.730±26.36 172.788±0.00 677.069±0.00 117.850±88.94 54.860±30.53 9.825±6.24 360.798±192.33 11.445±12.00 59.699±75.82 247.196±0.00 118.925±54.05
ENSMUSG00000096659 ENSMUST00000101973 N/A N/A 50.093±0.00 100.004±0.00 N/A N/A N/A N/A 92.118±50.80 N/A N/A N/A N/A N/A

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