C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008TP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs589 VISTA 9606 10:129416557-130017922
GeneTranscriptPositionBiotype
ENSG00000108001 (EBF3)
early B-cell factor 3 		ENST00000355311 (EBF3-001) 129836800-129963841 protein_coding
ENST00000368648 (EBF3-002) 129835283-129963841 protein_coding
ENST00000440978 (EBF3-004) 129837700-129842171 protein_coding
ENSG00000170430 (MGMT)
O-6-methylguanine-DNA methyltransferase 		ENST00000306010 (MGMT-001) 129467184-129768007 protein_coding
ENST00000462672 (MGMT-004) 129701627-129717867 processed_transcript
ENST00000482547 (MGMT-002) 129467262-129537164 retained_intron
ENST00000482653 (MGMT-003) 129467229-129564162 processed_transcript
ENSG00000227374 (RP11-109A6.3)
 ENST00000428273 (RP11-109A6.3-001) 129768844-129769435 lincRNA
ENSG00000237224 (RP11-109A6.2)
 ENST00000428178 (RP11-109A6.2-001) 129700716-129701546 antisense
ENST00000593883 (RP11-109A6.2-005) 129700258-129701262 antisense
ENST00000597245 (RP11-109A6.2-003) 129700469-129701262 antisense
ENST00000597465 (RP11-109A6.2-004) 129700148-129701262 antisense
ENST00000598332 (RP11-109A6.2-002) 129700887-129701557 antisense
ENSG00000275005 (RP11-234G16.5)
 ENST00000614150 (RP11-234G16.5-001) 129845328-129845895 antisense
ENSG00000275327 (RP11-234G16.4)
 ENST00000617939 (RP11-234G16.4-001) 129837505-129837794 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0008TP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs589 VISTA 10090 7:136791736-137393087
GeneTranscriptPositionBiotype
ENSMUSG00000010476 (Ebf3)
early B cell factor 3 		ENSMUST00000033378 (Ebf3-201) 137193673-137314445 protein_coding
ENSMUST00000106118 (Ebf3-202) 137193673-137314445 protein_coding
ENSMUST00000168203 (Ebf3-203) 137194698-137314414 protein_coding
ENSMUST00000169486 (Ebf3-204) 137193673-137314445 protein_coding
ENSMUSG00000040139 (9430038I01Rik)
RIKEN cDNA 9430038I01 gene 		ENSMUST00000068996 (9430038I01Rik-001) 137375574-137410762 protein_coding
ENSMUST00000117404 (9430038I01Rik-004) 137376137-137410735 protein_coding
ENSMUST00000120340 (9430038I01Rik-003) 137383046-137410732 protein_coding
ENSMUST00000135335 (9430038I01Rik-002) 137383014-137410756 retained_intron
ENSMUST00000145881 (9430038I01Rik-005) 137375574-137410756 processed_transcript
ENSMUSG00000054612 (Mgmt)
O-6-methylguanine-DNA methyltransferase 		ENSMUST00000081510 (Mgmt-201) 136894611-137128187 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008TP_0001ENSG00000108001ENST00000355311ENST00000368648ENST00000440978ENSG00000170430ENST00000306010ENST00000462672ENST00000482547ENST00000482653ENSG00000227374ENST00000428273ENSG00000237224ENST00000428178ENST00000593883ENST00000597245ENST00000597465ENST00000598332ENSG00000275005ENST00000614150ENSG00000275327ENST00000617939CIL_0008TP_0002ENSMUSG00000010476ENSMUST00000033378ENSMUST00000106118ENSMUST00000168203ENSMUST00000169486ENSMUSG00000040139ENSMUST00000068996ENSMUST00000117404ENSMUST00000120340ENSMUST00000135335ENSMUST00000145881ENSMUSG00000054612ENSMUST00000081510
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008TP_0001ENSG00000108001ENST00000355311ENST00000368648ENST00000440978ENSG00000170430ENST00000306010ENST00000482547ENST00000482653ENSG00000227374ENST00000428273ENSG00000237224ENST00000428178ENST00000593883ENST00000597245ENST00000597465ENST00000598332ENSG00000275005ENST00000614150ENSG00000275327ENST00000617939CIL_0008TP_0002ENSMUSG00000010476ENSMUST00000033378ENSMUST00000106118ENSMUST00000168203ENSMUST00000169486ENSMUSG00000040139ENSMUST00000068996ENSMUST00000117404ENSMUST00000120340ENSMUST00000135335ENSMUST00000145881ENSMUSG00000054612ENSMUST00000081510
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108001 ENST00000355311 1.982±0.00 N/A 0.031±0.00 0.032±0.00 0.356±0.00 0.367±0.15 0.264±0.00 N/A 1.250±0.00 0.096±0.00 0.426±0.22 0.100±0.00 N/A N/A
ENST00000368648 4.021±0.00 4.286±0.00 0.073±0.00 N/A 2.722±2.30 0.451±0.42 0.377±0.00 0.260±0.00 0.030±0.00 0.114±0.01 0.532±0.00 0.234±0.11 0.799±0.49 0.904±0.29
ENST00000440978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.716±0.00 N/A 1.734±0.00
ENSG00000170430 ENST00000306010 6.659±0.00 8.138±0.00 3.417±0.00 3.483±0.58 7.261±4.48 4.992±2.13 2.406±0.99 12.080±4.81 13.063±8.51 5.481±3.25 3.465±0.84 7.045±4.45 8.314±4.19 10.341±4.46
ENST00000462672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482547 N/A N/A N/A N/A 1.238±0.00 N/A N/A N/A N/A 0.733±0.00 N/A 1.462±0.00 N/A N/A
ENST00000482653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.676±0.00 N/A N/A
ENSG00000227374 ENST00000428273 N/A 0.205±0.00 N/A N/A 0.239±0.08 0.467±0.00 N/A N/A 0.429±0.00 0.402±0.33 N/A 0.162±0.00 N/A 0.189±0.00
ENSG00000237224 ENST00000428178 N/A N/A N/A 0.891±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00
ENST00000593883 N/A N/A 0.490±0.00 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597245 N/A N/A 0.473±0.00 N/A N/A 0.175±0.00 N/A 0.223±0.00 N/A N/A N/A N/A N/A N/A
ENST00000597465 N/A N/A N/A N/A N/A N/A 0.130±0.00 N/A N/A 0.391±0.00 N/A N/A N/A 0.319±0.00
ENST00000598332 N/A N/A N/A N/A N/A N/A N/A N/A 0.282±0.18 N/A N/A N/A N/A 0.300±0.00
ENSG00000275005 ENST00000614150 0.210±0.00 N/A N/A 0.089±0.00 N/A N/A N/A N/A 0.260±0.23 N/A N/A N/A N/A 0.335±0.04
ENSG00000275327 ENST00000617939 N/A N/A N/A N/A N/A 2.647±0.00 N/A N/A 0.309±0.00 3.680±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000010476 ENSMUST00000033378 3.266±1.49 0.938±0.65 0.174±0.01 16.122±8.05 1.907±0.86 0.514±0.03 0.783±0.50 0.178±0.11 0.032±0.03 0.183±0.00 0.736±0.50 0.391±0.26 0.205±0.09 0.291±0.00
ENSMUST00000106118 N/A 0.341±0.00 N/A 8.270±0.00 2.308±0.00 0.068±0.00 0.337±0.00 0.180±0.08 N/A N/A N/A 0.105±0.00 N/A N/A
ENSMUST00000168203 1.915±1.14 1.712±0.41 N/A N/A 3.207±1.62 0.394±0.17 0.542±0.00 0.185±0.09 0.023±0.01 0.156±0.04 N/A 0.528±0.19 0.128±0.00 0.552±0.32
ENSMUST00000169486 0.813±0.20 N/A 0.088±0.00 5.713±0.00 1.477±0.57 0.342±0.20 0.676±0.15 N/A 0.039±0.03 0.081±0.00 0.545±0.27 0.320±0.09 0.268±0.00 N/A
ENSMUSG00000040139 ENSMUST00000068996 2.713±0.33 3.001±0.37 2.756±0.49 1.481±0.71 3.440±1.15 6.738±0.52 2.151±0.45 2.901±0.47 4.271±0.65 5.174±0.08 1.705±0.44 7.140±3.81 4.028±0.97 0.736±0.30
ENSMUST00000117404 1.472±0.07 1.738±0.51 N/A 0.898±0.00 1.345±0.28 1.606±0.13 N/A 1.024±0.17 2.386±0.64 1.201±0.09 1.062±0.25 3.658±0.95 3.674±1.47 0.302±0.00
ENSMUST00000120340 0.481±0.10 0.649±0.00 0.172±0.00 0.183±0.10 0.394±0.08 N/A 0.128±0.00 0.136±0.00 0.224±0.00 0.432±0.11 0.061±0.00 0.517±0.26 0.124±0.01 0.089±0.06
ENSMUST00000135335 N/A 0.593±0.13 N/A N/A 0.390±0.01 N/A N/A 0.152±0.00 N/A N/A N/A 0.559±0.06 N/A 0.187±0.00
ENSMUST00000145881 N/A N/A N/A N/A N/A N/A N/A N/A 1.076±0.00 N/A 0.333±0.00 1.216±0.27 N/A 0.402±0.00
ENSMUSG00000054612 ENSMUST00000081510 14.312±4.28 5.901±1.17 8.426±0.45 1.085±0.55 9.031±2.64 4.474±0.76 7.544±1.02 8.054±1.78 13.052±8.10 3.499±0.72 4.571±1.26 12.717±3.93 2.536±2.14 2.302±0.49

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