C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008U8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1682 VISTA 9606 16:52406202-53010959
GeneTranscriptPositionBiotype
ENSG00000103460 (TOX3)
TOX high mobility group box family member 3 		ENST00000219746 (TOX3-003) 52438008-52547008 protein_coding
ENST00000407228 (TOX3-002) 52438005-52547802 protein_coding
ENST00000563091 (TOX3-004) 52450348-52547419 protein_coding
ENST00000566696 (TOX3-006) 52438006-52445726 retained_intron
ENST00000568436 (TOX3-005) 52464018-52546840 nonsense_mediated_decay
ENSG00000234337 (RP11-297L17.6)
 ENST00000567701 (RP11-297L17.6-001) 52655307-52656045 processed_pseudogene
ENSG00000249231 (CASC16)
cancer susceptibility candidate 16 (non-protein coding) 		ENST00000510238 (CASC16-001) 52552093-52606935 lincRNA
ENST00000563844 (CASC16-003) 52573179-52652105 lincRNA
ENST00000565755 (CASC16-002) 52552090-52554179 lincRNA
ENSG00000260258 (RP11-467J12.2)
 ENST00000569208 (RP11-467J12.2-001) 52942139-52943005 transcribed_processed_pseudogene
ENST00000602826 (RP11-467J12.2-002) 52942781-52943464 processed_transcript
ENSG00000260326 (RP11-467J12.1)
 ENST00000562636 (RP11-467J12.1-001) 52934813-52935635 processed_pseudogene
ENSG00000260393 (RP11-297L17.3)
 ENST00000565771 (RP11-297L17.3-001) 52607762-52608158 lincRNA
ENSG00000260939 (RP11-467J12.3)
 ENST00000564816 (RP11-467J12.3-001) 53010395-53011286 processed_pseudogene
ENSG00000260963 (RP11-297L17.2)
 ENST00000564361 (RP11-297L17.2-003) 52607473-52611059 lincRNA
ENST00000565153 (RP11-297L17.2-001) 52607349-52613894 lincRNA
ENST00000566645 (RP11-297L17.2-002) 52612455-52613908 lincRNA
ENSG00000279427 (RP11-132F7.2)
 ENST00000624321 (RP11-132F7.2-001) 52436772-52437474 TEC

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0008U8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1682 VISTA 10090 8:90194121-90799562
GeneTranscriptPositionBiotype
ENSMUSG00000043668 (Tox3)
TOX high mobility group box family member 3 		ENSMUST00000109621 (Tox3-001) 90247040-90348343 protein_coding
ENSMUST00000176034 (Tox3-002) 90257946-90348126 protein_coding
ENSMUST00000176616 (Tox3-003) 90252706-90348131 protein_coding

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008U8_0001ENSG00000103460ENST00000219746ENST00000407228ENST00000563091ENST00000566696ENST00000568436ENSG00000234337ENST00000567701ENSG00000249231ENST00000510238ENST00000563844ENST00000565755ENSG00000260258ENST00000569208ENST00000602826ENSG00000260326ENST00000562636ENSG00000260393ENST00000565771ENSG00000260939ENST00000564816ENSG00000260963ENST00000564361ENST00000565153ENST00000566645ENSG00000279427ENST00000624321CIL_0008U8_0002ENSMUSG00000043668ENSMUST00000109621ENSMUST00000176034ENSMUST00000176616
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008U8_0001ENSG00000103460ENST00000219746ENST00000407228ENST00000566696ENSG00000234337ENST00000567701ENSG00000249231ENST00000510238ENST00000565755ENSG00000260258ENST00000569208ENST00000602826ENSG00000260326ENST00000562636ENSG00000260393ENST00000565771ENSG00000260939ENST00000564816ENSG00000260963ENST00000564361ENST00000565153ENST00000566645ENSG00000279427ENST00000624321CIL_0008U8_0002ENSMUSG00000043668ENSMUST00000109621ENSMUST00000176034ENSMUST00000176616
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000103460 ENST00000219746 0.801±0.00 N/A N/A 0.855±0.00 0.444±0.00 0.432±0.00 N/A 5.272±0.00 0.896±0.00 N/A 0.011±0.00 1.777±2.19 0.058±0.05 0.309±0.20
ENST00000407228 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 0.002±0.00 0.588±0.00 N/A 0.106±0.00
ENST00000563091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566696 N/A N/A 0.436±0.00 N/A 0.267±0.00 N/A N/A N/A N/A 0.032±0.00 N/A 0.289±0.00 N/A N/A
ENST00000568436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234337 ENST00000567701 0.038±0.00 0.086±0.00 N/A 0.064±0.00 0.109±0.09 N/A N/A 0.022±0.00 N/A N/A 0.059±0.02 0.028±0.00 0.059±0.00 0.057±0.00
ENSG00000249231 ENST00000510238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.694±0.32
ENST00000563844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565755 N/A N/A N/A 0.097±0.00 N/A N/A N/A 0.089±0.00 N/A N/A N/A 0.091±0.00 0.115±0.00 N/A
ENSG00000260258 ENST00000569208 N/A N/A N/A N/A N/A 0.331±0.00 0.075±0.00 N/A 0.072±0.00 N/A 0.346±0.00 0.046±0.00 N/A N/A
ENST00000602826 N/A N/A 0.446±0.00 N/A 0.345±0.00 0.185±0.00 N/A N/A 0.387±0.00 0.108±0.00 N/A 0.051±0.00 N/A N/A
ENSG00000260326 ENST00000562636 0.063±0.00 0.022±0.00 N/A 0.074±0.00 0.095±0.00 0.360±0.25 N/A 0.138±0.00 0.215±0.00 N/A 0.019±0.00 0.039±0.01 N/A 0.061±0.00
ENSG00000260393 ENST00000565771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.14
ENSG00000260939 ENST00000564816 N/A 0.052±0.00 N/A N/A 0.394±0.00 N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A
ENSG00000260963 ENST00000564361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.615±0.21
ENST00000565153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.284±0.00 N/A 0.555±0.24
ENST00000566645 N/A N/A 1.785±0.00 N/A N/A N/A N/A 1.407±0.67 0.894±0.00 N/A N/A 1.186±0.00 N/A 0.475±0.05
ENSG00000279427 ENST00000624321 0.277±0.00 N/A 0.426±0.00 0.375±0.00 0.054±0.00 0.176±0.10 N/A 0.437±0.35 0.431±0.00 N/A N/A 0.423±0.24 N/A 0.083±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000043668 ENSMUST00000109621 1.714±0.03 1.566±0.22 0.139±0.07 13.480±11.42 0.432±0.24 5.789±2.17 0.691±0.43 3.335±0.52 0.050±0.05 1.817±0.16 0.020±0.01 2.266±1.57 0.186±0.08 0.305±0.11
ENSMUST00000176034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A
ENSMUST00000176616 N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A 0.050±0.00 N/A 0.094±0.00 N/A 0.149±0.00 N/A

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