Institute of Cardiovascular Regeneration Webtool Repository

Source ID	Type	Tax ID	Position
hs1332	VISTA	9606	3:181940986-182543339
Gene	Transcript	Position	Biotype
ENSG00000242012 (RP11-338L18.1)	ENST00000473893 (RP11-338L18.1-001)	182365147-182368256	lincRNA
ENSG00000242512 (LINC01206) long intergenic non-protein coding RNA 1206	ENST00000467313 (LINC01206-004)	181952374-181973345	lincRNA
ENST00000474045 (LINC01206-002)	181952386-182003122	lincRNA
ENST00000476815 (LINC01206-005)	181952404-181971879	lincRNA
ENST00000482787 (LINC01206-001)	181952343-182010678	lincRNA
ENST00000490001 (LINC01206-003)	181952373-182000262	lincRNA
ENST00000596820 (LINC01206-007)	181952370-181972497	lincRNA
ENST00000600750 (LINC01206-006)	181952349-181972497	lincRNA
ENST00000608042 (LINC01206-009)	181971211-181973290	lincRNA
ENST00000608102 (LINC01206-010)	181971214-181972470	lincRNA
ENST00000608336 (LINC01206-012)	181967323-181972438	lincRNA
ENST00000609052 (LINC01206-013)	181965983-181972492	lincRNA
ENST00000609168 (LINC01206-008)	181971229-181973335	lincRNA
ENST00000609852 (LINC01206-011)	181967858-181972470	lincRNA
ENST00000610910 (LINC01206-016)	181952390-181963521	lincRNA
ENST00000614303 (LINC01206-014)	181952378-181953734	lincRNA
ENST00000619662 (LINC01206-015)	181952385-181957292	lincRNA
ENSG00000244199 (RP11-139K4.4)	ENST00000498782 (RP11-139K4.4-001)	182460417-182461072	processed_pseudogene
ENSG00000244247 (RP11-139K4.2)	ENST00000489016 (RP11-139K4.2-001)	182498264-182507124	lincRNA
ENSG00000252257 (RN7SKP265) RNA, 7SK small nuclear pseudogene 265	ENST00000516448 (RN7SKP265-201)	181968459-181968681	misc_RNA

Notice (8): Undefined index: CIL_0008UI_0002 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0008UI_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000240478' => null,
		'ENSG00000241098' => 'uncharacterized LOC401103',
		'ENSG00000242012' => null,
		'ENSG00000242512' => 'long intergenic non-protein coding RNA 1206',
		'ENSG00000244199' => null,
		'ENSG00000244247' => null,
		'ENSG00000252257' => 'RNA, 7SK small nuclear pseudogene 265',
		'ENSMUSG00000093499' => 'predicted gene, 25442',
		'ENSMUSG00000098862' => 'microRNA 6378'
	),
	'gene_name_arr' => array(
		'ENSG00000240478' => 'RP11-416O18.2',
		'ENSG00000241098' => 'FLJ46066',
		'ENSG00000242012' => 'RP11-338L18.1',
		'ENSG00000242512' => 'LINC01206',
		'ENSG00000244199' => 'RP11-139K4.4',
		'ENSG00000244247' => 'RP11-139K4.2',
		'ENSG00000252257' => 'RN7SKP265',
		'ENSMUSG00000093499' => 'Gm25442',
		'ENSMUSG00000098862' => 'Mir6378'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 3 => 'Adrenal',
		(int) 7 => 'Brain',
		(int) 11 => 'Breast',
		(int) 13 => 'Colon',
		(int) 16 => 'Heart',
		(int) 21 => 'Kidney',
		(int) 24 => 'Liver',
		(int) 27 => 'Lung',
		(int) 28 => 'Muscle',
		(int) 29 => 'Ovary',
		(int) 31 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 24,
	'longest_tissue_len' => (int) 7,
	'transcript_data' => array(
		'ENST00000462382' => array(
			'start' => '182121884',
			'end' => '182142137',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-416O18.2-001'
		),
		'ENST00000496220' => array(
			'start' => '182446970',
			'end' => '182486364',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FLJ46066-001'
		),
		'ENST00000473893' => array(
			'start' => '182365147',
			'end' => '182368256',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-338L18.1-001'
		),
		'ENST00000467313' => array(
			'start' => '181952374',
			'end' => '181973345',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-004'
		),
		'ENST00000474045' => array(
			'start' => '181952386',
			'end' => '182003122',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-002'
		),
		'ENST00000476815' => array(
			'start' => '181952404',
			'end' => '181971879',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-005'
		),
		'ENST00000482787' => array(
			'start' => '181952343',
			'end' => '182010678',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-001'
		),
		'ENST00000490001' => array(
			'start' => '181952373',
			'end' => '182000262',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-003'
		),
		'ENST00000596820' => array(
			'start' => '181952370',
			'end' => '181972497',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-007'
		),
		'ENST00000600750' => array(
			'start' => '181952349',
			'end' => '181972497',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-006'
		),
		'ENST00000608042' => array(
			'start' => '181971211',
			'end' => '181973290',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-009'
		),
		'ENST00000608102' => array(
			'start' => '181971214',
			'end' => '181972470',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-010'
		),
		'ENST00000608336' => array(
			'start' => '181967323',
			'end' => '181972438',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-012'
		),
		'ENST00000609052' => array(
			'start' => '181965983',
			'end' => '181972492',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-013'
		),
		'ENST00000609168' => array(
			'start' => '181971229',
			'end' => '181973335',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-008'
		),
		'ENST00000609852' => array(
			'start' => '181967858',
			'end' => '181972470',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-011'
		),
		'ENST00000610910' => array(
			'start' => '181952390',
			'end' => '181963521',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-016'
		),
		'ENST00000614303' => array(
			'start' => '181952378',
			'end' => '181953734',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-014'
		),
		'ENST00000619662' => array(
			'start' => '181952385',
			'end' => '181957292',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-015'
		),
		'ENST00000498782' => array(
			'start' => '182460417',
			'end' => '182461072',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-139K4.4-001'
		),
		'ENST00000489016' => array(
			'start' => '182498264',
			'end' => '182507124',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-139K4.2-001'
		),
		'ENST00000516448' => array(
			'start' => '181968459',
			'end' => '181968681',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'RN7SKP265-201'
		),
		'ENSMUST00000177270' => array(
			'start' => '35325614',
			'end' => '35325705',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm25442-201'
		),
		'ENSMUST00000183357' => array(
			'start' => '34922545',
			'end' => '34922651',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir6378-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0008UI_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0008UI_0001' => array(
		'genes_in_region' => array(
			'ENSG00000242012' => array(
				[maximum depth reached]
			),
			'ENSG00000242512' => array(
				[maximum depth reached]
			),
			'ENSG00000244199' => array(
				[maximum depth reached]
			),
			'ENSG00000244247' => array(
				[maximum depth reached]
			),
			'ENSG00000252257' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Breast',
			(int) 2 => 'Adrenal',
			(int) 3 => 'Colon',
			(int) 4 => 'Heart',
			(int) 5 => 'Kidney',
			(int) 6 => 'Ovary',
			(int) 7 => 'Adipose',
			(int) 8 => 'Brain',
			(int) 9 => 'Colon',
			(int) 10 => 'Heart',
			(int) 11 => 'Ovary',
			(int) 12 => 'Testis',
			(int) 13 => 'Adipose',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Brain',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Heart',
			(int) 20 => 'Liver',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Brain',
			(int) 24 => 'Breast',
			(int) 25 => 'Colon',
			(int) 26 => 'Heart',
			(int) 27 => 'Kidney',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Adrenal',
			(int) 31 => 'Brain',
			(int) 32 => 'Kidney',
			(int) 33 => 'Testis',
			(int) 34 => 'Testis',
			(int) 35 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000240478' => null,
	'ENSG00000241098' => 'uncharacterized LOC401103',
	'ENSG00000242012' => null,
	'ENSG00000242512' => 'long intergenic non-protein coding RNA 1206',
	'ENSG00000244199' => null,
	'ENSG00000244247' => null,
	'ENSG00000252257' => 'RNA, 7SK small nuclear pseudogene 265',
	'ENSMUSG00000093499' => 'predicted gene, 25442',
	'ENSMUSG00000098862' => 'microRNA 6378'
)
$gene_name_arr = array(
	'ENSG00000240478' => 'RP11-416O18.2',
	'ENSG00000241098' => 'FLJ46066',
	'ENSG00000242012' => 'RP11-338L18.1',
	'ENSG00000242512' => 'LINC01206',
	'ENSG00000244199' => 'RP11-139K4.4',
	'ENSG00000244247' => 'RP11-139K4.2',
	'ENSG00000252257' => 'RN7SKP265',
	'ENSMUSG00000093499' => 'Gm25442',
	'ENSMUSG00000098862' => 'Mir6378'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0008UI_0001',
			'tax_id' => '9606',
			'chromosome' => '3',
			'seq_start' => '181940986',
			'seq_end' => '182543339',
			'region_length' => '602353',
			'region_type' => 'VISTA',
			'el_id' => 'hs1332'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0008UI_0002',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '34787536',
			'seq_end' => '35389765',
			'region_length' => '602229',
			'region_type' => 'VISTA',
			'el_id' => 'hs1332'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 3 => 'Adrenal',
	(int) 7 => 'Brain',
	(int) 11 => 'Breast',
	(int) 13 => 'Colon',
	(int) 16 => 'Heart',
	(int) 21 => 'Kidney',
	(int) 24 => 'Liver',
	(int) 27 => 'Lung',
	(int) 28 => 'Muscle',
	(int) 29 => 'Ovary',
	(int) 31 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 24
$longest_tissue_len = (int) 7
$transcript_data = array(
	'ENST00000462382' => array(
		'start' => '182121884',
		'end' => '182142137',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-416O18.2-001'
	),
	'ENST00000496220' => array(
		'start' => '182446970',
		'end' => '182486364',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FLJ46066-001'
	),
	'ENST00000473893' => array(
		'start' => '182365147',
		'end' => '182368256',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-338L18.1-001'
	),
	'ENST00000467313' => array(
		'start' => '181952374',
		'end' => '181973345',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-004'
	),
	'ENST00000474045' => array(
		'start' => '181952386',
		'end' => '182003122',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-002'
	),
	'ENST00000476815' => array(
		'start' => '181952404',
		'end' => '181971879',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-005'
	),
	'ENST00000482787' => array(
		'start' => '181952343',
		'end' => '182010678',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-001'
	),
	'ENST00000490001' => array(
		'start' => '181952373',
		'end' => '182000262',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-003'
	),
	'ENST00000596820' => array(
		'start' => '181952370',
		'end' => '181972497',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-007'
	),
	'ENST00000600750' => array(
		'start' => '181952349',
		'end' => '181972497',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-006'
	),
	'ENST00000608042' => array(
		'start' => '181971211',
		'end' => '181973290',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-009'
	),
	'ENST00000608102' => array(
		'start' => '181971214',
		'end' => '181972470',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-010'
	),
	'ENST00000608336' => array(
		'start' => '181967323',
		'end' => '181972438',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-012'
	),
	'ENST00000609052' => array(
		'start' => '181965983',
		'end' => '181972492',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-013'
	),
	'ENST00000609168' => array(
		'start' => '181971229',
		'end' => '181973335',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-008'
	),
	'ENST00000609852' => array(
		'start' => '181967858',
		'end' => '181972470',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-011'
	),
	'ENST00000610910' => array(
		'start' => '181952390',
		'end' => '181963521',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-016'
	),
	'ENST00000614303' => array(
		'start' => '181952378',
		'end' => '181953734',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-014'
	),
	'ENST00000619662' => array(
		'start' => '181952385',
		'end' => '181957292',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-015'
	),
	'ENST00000498782' => array(
		'start' => '182460417',
		'end' => '182461072',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-139K4.4-001'
	),
	'ENST00000489016' => array(
		'start' => '182498264',
		'end' => '182507124',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-139K4.2-001'
	),
	'ENST00000516448' => array(
		'start' => '181968459',
		'end' => '181968681',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'RN7SKP265-201'
	),
	'ENSMUST00000177270' => array(
		'start' => '35325614',
		'end' => '35325705',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm25442-201'
	),
	'ENSMUST00000183357' => array(
		'start' => '34922545',
		'end' => '34922651',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir6378-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0008UI_0001' => array(
		'genes_in_region' => array(
			'ENSG00000242012' => array(
				[maximum depth reached]
			),
			'ENSG00000242512' => array(
				[maximum depth reached]
			),
			'ENSG00000244199' => array(
				[maximum depth reached]
			),
			'ENSG00000244247' => array(
				[maximum depth reached]
			),
			'ENSG00000252257' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Breast',
			(int) 2 => 'Adrenal',
			(int) 3 => 'Colon',
			(int) 4 => 'Heart',
			(int) 5 => 'Kidney',
			(int) 6 => 'Ovary',
			(int) 7 => 'Adipose',
			(int) 8 => 'Brain',
			(int) 9 => 'Colon',
			(int) 10 => 'Heart',
			(int) 11 => 'Ovary',
			(int) 12 => 'Testis',
			(int) 13 => 'Adipose',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Brain',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Heart',
			(int) 20 => 'Liver',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Brain',
			(int) 24 => 'Breast',
			(int) 25 => 'Colon',
			(int) 26 => 'Heart',
			(int) 27 => 'Kidney',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Adrenal',
			(int) 31 => 'Brain',
			(int) 32 => 'Kidney',
			(int) 33 => 'Testis',
			(int) 34 => 'Testis',
			(int) 35 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0008UI_0002',
		'tax_id' => '10090',
		'chromosome' => '3',
		'seq_start' => '34787536',
		'seq_end' => '35389765',
		'region_length' => '602229',
		'region_type' => 'VISTA',
		'el_id' => 'hs1332'
	)
)
$gene_el = array(
	'ENST00000516448' => array(
		'Testis' => array(
			'average_FPKM' => '1.053',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000252257'
$is_first = false
$tran_el = array(
	'Testis' => array(
		'average_FPKM' => '1.053',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000516448'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0008UI_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000240478' => null,
		'ENSG00000241098' => 'uncharacterized LOC401103',
		'ENSG00000242012' => null,
		'ENSG00000242512' => 'long intergenic non-protein coding RNA 1206',
		'ENSG00000244199' => null,
		'ENSG00000244247' => null,
		'ENSG00000252257' => 'RNA, 7SK small nuclear pseudogene 265',
		'ENSMUSG00000093499' => 'predicted gene, 25442',
		'ENSMUSG00000098862' => 'microRNA 6378'
	),
	'gene_name_arr' => array(
		'ENSG00000240478' => 'RP11-416O18.2',
		'ENSG00000241098' => 'FLJ46066',
		'ENSG00000242012' => 'RP11-338L18.1',
		'ENSG00000242512' => 'LINC01206',
		'ENSG00000244199' => 'RP11-139K4.4',
		'ENSG00000244247' => 'RP11-139K4.2',
		'ENSG00000252257' => 'RN7SKP265',
		'ENSMUSG00000093499' => 'Gm25442',
		'ENSMUSG00000098862' => 'Mir6378'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 3 => 'Adrenal',
		(int) 7 => 'Brain',
		(int) 11 => 'Breast',
		(int) 13 => 'Colon',
		(int) 16 => 'Heart',
		(int) 21 => 'Kidney',
		(int) 24 => 'Liver',
		(int) 27 => 'Lung',
		(int) 28 => 'Muscle',
		(int) 29 => 'Ovary',
		(int) 31 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 24,
	'longest_tissue_len' => (int) 7,
	'transcript_data' => array(
		'ENST00000462382' => array(
			'start' => '182121884',
			'end' => '182142137',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-416O18.2-001'
		),
		'ENST00000496220' => array(
			'start' => '182446970',
			'end' => '182486364',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FLJ46066-001'
		),
		'ENST00000473893' => array(
			'start' => '182365147',
			'end' => '182368256',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-338L18.1-001'
		),
		'ENST00000467313' => array(
			'start' => '181952374',
			'end' => '181973345',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-004'
		),
		'ENST00000474045' => array(
			'start' => '181952386',
			'end' => '182003122',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-002'
		),
		'ENST00000476815' => array(
			'start' => '181952404',
			'end' => '181971879',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-005'
		),
		'ENST00000482787' => array(
			'start' => '181952343',
			'end' => '182010678',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-001'
		),
		'ENST00000490001' => array(
			'start' => '181952373',
			'end' => '182000262',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-003'
		),
		'ENST00000596820' => array(
			'start' => '181952370',
			'end' => '181972497',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-007'
		),
		'ENST00000600750' => array(
			'start' => '181952349',
			'end' => '181972497',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-006'
		),
		'ENST00000608042' => array(
			'start' => '181971211',
			'end' => '181973290',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-009'
		),
		'ENST00000608102' => array(
			'start' => '181971214',
			'end' => '181972470',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-010'
		),
		'ENST00000608336' => array(
			'start' => '181967323',
			'end' => '181972438',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-012'
		),
		'ENST00000609052' => array(
			'start' => '181965983',
			'end' => '181972492',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-013'
		),
		'ENST00000609168' => array(
			'start' => '181971229',
			'end' => '181973335',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-008'
		),
		'ENST00000609852' => array(
			'start' => '181967858',
			'end' => '181972470',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-011'
		),
		'ENST00000610910' => array(
			'start' => '181952390',
			'end' => '181963521',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-016'
		),
		'ENST00000614303' => array(
			'start' => '181952378',
			'end' => '181953734',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-014'
		),
		'ENST00000619662' => array(
			'start' => '181952385',
			'end' => '181957292',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01206-015'
		),
		'ENST00000498782' => array(
			'start' => '182460417',
			'end' => '182461072',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-139K4.4-001'
		),
		'ENST00000489016' => array(
			'start' => '182498264',
			'end' => '182507124',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-139K4.2-001'
		),
		'ENST00000516448' => array(
			'start' => '181968459',
			'end' => '181968681',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'RN7SKP265-201'
		),
		'ENSMUST00000177270' => array(
			'start' => '35325614',
			'end' => '35325705',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm25442-201'
		),
		'ENSMUST00000183357' => array(
			'start' => '34922545',
			'end' => '34922651',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir6378-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0008UI_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0008UI_0001' => array(
		'genes_in_region' => array(
			'ENSG00000242012' => array(
				[maximum depth reached]
			),
			'ENSG00000242512' => array(
				[maximum depth reached]
			),
			'ENSG00000244199' => array(
				[maximum depth reached]
			),
			'ENSG00000244247' => array(
				[maximum depth reached]
			),
			'ENSG00000252257' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Breast',
			(int) 2 => 'Adrenal',
			(int) 3 => 'Colon',
			(int) 4 => 'Heart',
			(int) 5 => 'Kidney',
			(int) 6 => 'Ovary',
			(int) 7 => 'Adipose',
			(int) 8 => 'Brain',
			(int) 9 => 'Colon',
			(int) 10 => 'Heart',
			(int) 11 => 'Ovary',
			(int) 12 => 'Testis',
			(int) 13 => 'Adipose',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Brain',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Heart',
			(int) 20 => 'Liver',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Brain',
			(int) 24 => 'Breast',
			(int) 25 => 'Colon',
			(int) 26 => 'Heart',
			(int) 27 => 'Kidney',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Adrenal',
			(int) 31 => 'Brain',
			(int) 32 => 'Kidney',
			(int) 33 => 'Testis',
			(int) 34 => 'Testis',
			(int) 35 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000240478' => null,
	'ENSG00000241098' => 'uncharacterized LOC401103',
	'ENSG00000242012' => null,
	'ENSG00000242512' => 'long intergenic non-protein coding RNA 1206',
	'ENSG00000244199' => null,
	'ENSG00000244247' => null,
	'ENSG00000252257' => 'RNA, 7SK small nuclear pseudogene 265',
	'ENSMUSG00000093499' => 'predicted gene, 25442',
	'ENSMUSG00000098862' => 'microRNA 6378'
)
$gene_name_arr = array(
	'ENSG00000240478' => 'RP11-416O18.2',
	'ENSG00000241098' => 'FLJ46066',
	'ENSG00000242012' => 'RP11-338L18.1',
	'ENSG00000242512' => 'LINC01206',
	'ENSG00000244199' => 'RP11-139K4.4',
	'ENSG00000244247' => 'RP11-139K4.2',
	'ENSG00000252257' => 'RN7SKP265',
	'ENSMUSG00000093499' => 'Gm25442',
	'ENSMUSG00000098862' => 'Mir6378'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0008UI_0001',
			'tax_id' => '9606',
			'chromosome' => '3',
			'seq_start' => '181940986',
			'seq_end' => '182543339',
			'region_length' => '602353',
			'region_type' => 'VISTA',
			'el_id' => 'hs1332'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0008UI_0002',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '34787536',
			'seq_end' => '35389765',
			'region_length' => '602229',
			'region_type' => 'VISTA',
			'el_id' => 'hs1332'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 3 => 'Adrenal',
	(int) 7 => 'Brain',
	(int) 11 => 'Breast',
	(int) 13 => 'Colon',
	(int) 16 => 'Heart',
	(int) 21 => 'Kidney',
	(int) 24 => 'Liver',
	(int) 27 => 'Lung',
	(int) 28 => 'Muscle',
	(int) 29 => 'Ovary',
	(int) 31 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 24
$longest_tissue_len = (int) 7
$transcript_data = array(
	'ENST00000462382' => array(
		'start' => '182121884',
		'end' => '182142137',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-416O18.2-001'
	),
	'ENST00000496220' => array(
		'start' => '182446970',
		'end' => '182486364',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FLJ46066-001'
	),
	'ENST00000473893' => array(
		'start' => '182365147',
		'end' => '182368256',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-338L18.1-001'
	),
	'ENST00000467313' => array(
		'start' => '181952374',
		'end' => '181973345',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-004'
	),
	'ENST00000474045' => array(
		'start' => '181952386',
		'end' => '182003122',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-002'
	),
	'ENST00000476815' => array(
		'start' => '181952404',
		'end' => '181971879',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-005'
	),
	'ENST00000482787' => array(
		'start' => '181952343',
		'end' => '182010678',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-001'
	),
	'ENST00000490001' => array(
		'start' => '181952373',
		'end' => '182000262',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-003'
	),
	'ENST00000596820' => array(
		'start' => '181952370',
		'end' => '181972497',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-007'
	),
	'ENST00000600750' => array(
		'start' => '181952349',
		'end' => '181972497',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-006'
	),
	'ENST00000608042' => array(
		'start' => '181971211',
		'end' => '181973290',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-009'
	),
	'ENST00000608102' => array(
		'start' => '181971214',
		'end' => '181972470',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-010'
	),
	'ENST00000608336' => array(
		'start' => '181967323',
		'end' => '181972438',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-012'
	),
	'ENST00000609052' => array(
		'start' => '181965983',
		'end' => '181972492',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-013'
	),
	'ENST00000609168' => array(
		'start' => '181971229',
		'end' => '181973335',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-008'
	),
	'ENST00000609852' => array(
		'start' => '181967858',
		'end' => '181972470',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-011'
	),
	'ENST00000610910' => array(
		'start' => '181952390',
		'end' => '181963521',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-016'
	),
	'ENST00000614303' => array(
		'start' => '181952378',
		'end' => '181953734',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-014'
	),
	'ENST00000619662' => array(
		'start' => '181952385',
		'end' => '181957292',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01206-015'
	),
	'ENST00000498782' => array(
		'start' => '182460417',
		'end' => '182461072',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-139K4.4-001'
	),
	'ENST00000489016' => array(
		'start' => '182498264',
		'end' => '182507124',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-139K4.2-001'
	),
	'ENST00000516448' => array(
		'start' => '181968459',
		'end' => '181968681',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'RN7SKP265-201'
	),
	'ENSMUST00000177270' => array(
		'start' => '35325614',
		'end' => '35325705',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm25442-201'
	),
	'ENSMUST00000183357' => array(
		'start' => '34922545',
		'end' => '34922651',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir6378-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0008UI_0001' => array(
		'genes_in_region' => array(
			'ENSG00000242012' => array(
				[maximum depth reached]
			),
			'ENSG00000242512' => array(
				[maximum depth reached]
			),
			'ENSG00000244199' => array(
				[maximum depth reached]
			),
			'ENSG00000244247' => array(
				[maximum depth reached]
			),
			'ENSG00000252257' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Breast',
			(int) 2 => 'Adrenal',
			(int) 3 => 'Colon',
			(int) 4 => 'Heart',
			(int) 5 => 'Kidney',
			(int) 6 => 'Ovary',
			(int) 7 => 'Adipose',
			(int) 8 => 'Brain',
			(int) 9 => 'Colon',
			(int) 10 => 'Heart',
			(int) 11 => 'Ovary',
			(int) 12 => 'Testis',
			(int) 13 => 'Adipose',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Brain',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Heart',
			(int) 20 => 'Liver',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Brain',
			(int) 24 => 'Breast',
			(int) 25 => 'Colon',
			(int) 26 => 'Heart',
			(int) 27 => 'Kidney',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Adrenal',
			(int) 31 => 'Brain',
			(int) 32 => 'Kidney',
			(int) 33 => 'Testis',
			(int) 34 => 'Testis',
			(int) 35 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0008UI_0002',
		'tax_id' => '10090',
		'chromosome' => '3',
		'seq_start' => '34787536',
		'seq_end' => '35389765',
		'region_length' => '602229',
		'region_type' => 'VISTA',
		'el_id' => 'hs1332'
	)
)
$gene_el = array(
	'ENST00000516448' => array(
		'Testis' => array(
			'average_FPKM' => '1.053',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000252257'
$is_first = false
$tran_el = array(
	'Testis' => array(
		'average_FPKM' => '1.053',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000516448'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
hs1332		VISTA	10090	3:34787536-35389765
Gene		Transcript	Position	Biotype

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Homo sapiens Ensembl (GRCh38)

Mus musculus Ensembl (GRCm38)

Expression Patterns

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