C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008UL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1335 VISTA 9606 6:21848345-22451158
GeneTranscriptPositionBiotype
ENSG00000172179 (PRL)
prolactin 		ENST00000306482 (PRL-001) 22287251-22297501 protein_coding
ENST00000615510 (PRL-201) 22287244-22297501 protein_coding
ENST00000617911 (PRL-202) 22287244-22297501 protein_coding
ENSG00000219404 (RP11-524C21.1)
 ENST00000403247 (RP11-524C21.1-001) 22213306-22214237 processed_pseudogene
ENSG00000222515 (RN7SKP240)
RNA, 7SK small nuclear pseudogene 240 		ENST00000410583 (RN7SKP240-201) 22085544-22085918 misc_RNA
ENSG00000260049 (RP3-404K8.2)
 ENST00000561912 (RP3-404K8.2-001) 22260424-22317798 antisense
ENSG00000260455 (CASC14)
cancer susceptibility candidate 14 (non-protein coding) 		ENST00000566912 (CASC14-001) 22134957-22147193 lincRNA
ENSG00000261568 (RP11-524C21.2)
 ENST00000567753 (RP11-524C21.2-001) 22220781-22222395 lincRNA
ENSG00000272168 (CASC15)
cancer susceptibility candidate 15 (non-protein coding) 		ENST00000444265 (CASC15-002) 21898720-22214505 lincRNA
ENST00000605917 (CASC15-006) 22147208-22151668 lincRNA
ENST00000606197 (CASC15-004) 22146654-22197219 lincRNA
ENST00000606336 (CASC15-005) 21664772-21909837 lincRNA
ENST00000606851 (CASC15-003) 21666444-22194387 lincRNA
ENST00000607048 (CASC15-001) 21668819-22194385 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0008UL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1335 VISTA 10090 13:28115132-28717928
GeneTranscriptPositionBiotype
ENSMUSG00000017064 (Prl5a1)
prolactin family 5, subfamily a, member 1 		ENSMUST00000017208 (Prl5a1-001) 28142484-28151611 protein_coding
ENSMUSG00000061330 (Gm11361)
predicted pseudogene 11361 		ENSMUST00000077163 (Gm11361-001) 28257636-28258094 processed_pseudogene
ENSMUSG00000085936 (2610307P16Rik)
RIKEN cDNA 2610307P16 gene 		ENSMUST00000122881 (2610307P16Rik-002) 28460778-28480841 processed_transcript
ENSMUST00000125358 (2610307P16Rik-003) 28561484-28883456 processed_transcript
ENSMUST00000134624 (2610307P16Rik-006) 28668650-28885344 processed_transcript
ENSMUST00000134787 (2610307P16Rik-007) 28460034-28521108 processed_transcript
ENSMUST00000148885 (2610307P16Rik-001) 28460778-28885620 processed_transcript
ENSMUST00000154298 (2610307P16Rik-004) 28460941-28516781 processed_transcript
ENSMUST00000155292 (2610307P16Rik-005) 28505717-28516940 processed_transcript
ENSMUSG00000086785 (Gm6081)
predicted gene 6081 		ENSMUST00000134472 (Gm6081-001) 28510744-28511232 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008UL_0001ENSG00000172179ENST00000306482ENST00000615510ENST00000617911ENSG00000219404ENST00000403247ENSG00000222515ENST00000410583ENSG00000260049ENST00000561912ENSG00000260455ENST00000566912ENSG00000261568ENST00000567753ENSG00000272168ENST00000444265ENST00000605917ENST00000606197ENST00000606336ENST00000606851ENST00000607048CIL_0008UL_0002ENSMUSG00000017064ENSMUST00000017208ENSMUSG00000061330ENSMUST00000077163ENSMUSG00000085936ENSMUST00000122881ENSMUST00000125358ENSMUST00000134624ENSMUST00000134787ENSMUST00000148885ENSMUST00000154298ENSMUST00000155292ENSMUSG00000086785ENSMUST00000134472
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008UL_0001ENSG00000172179ENST00000306482ENST00000615510ENST00000617911ENSG00000219404ENST00000403247ENSG00000222515ENST00000410583ENSG00000260049ENST00000561912ENSG00000260455ENST00000566912ENSG00000261568ENST00000567753ENSG00000272168ENST00000444265ENST00000605917ENST00000606197ENST00000606336ENST00000606851ENST00000607048CIL_0008UL_0002ENSMUSG00000017064ENSMUST00000017208ENSMUSG00000061330ENSMUST00000077163ENSMUSG00000085936ENSMUST00000122881ENSMUST00000125358ENSMUST00000134624ENSMUST00000134787ENSMUST00000148885ENSMUST00000154298ENSMUST00000155292ENSMUSG00000086785ENSMUST00000134472
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000172179 ENST00000306482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 0.034±0.02 13.444±0.00 0.641±0.09
ENST00000615510 0.037±0.00 N/A N/A N/A 0.096±0.00 0.025±0.00 N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A
ENST00000617911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A
ENSG00000219404 ENST00000403247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.232±0.04 N/A N/A
ENSG00000222515 ENST00000410583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.389±0.18 N/A N/A
ENSG00000260049 ENST00000561912 N/A 0.046±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.085±0.00
ENSG00000260455 ENST00000566912 N/A N/A N/A N/A N/A 0.253±0.00 N/A 0.244±0.00 N/A N/A 0.084±0.00 N/A 0.031±0.01 N/A
ENSG00000261568 ENST00000567753 N/A 0.013±0.00 N/A 0.111±0.05 N/A 0.147±0.11 N/A 0.037±0.00 N/A 0.040±0.00 N/A 0.334±0.31 0.021±0.00 0.076±0.00
ENSG00000272168 ENST00000444265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.00 1.143±0.00 N/A 0.929±0.00
ENST00000605917 0.056±0.00 0.087±0.00 0.440±0.00 0.696±0.30 0.505±0.34 0.171±0.10 0.184±0.00 0.156±0.00 0.405±0.00 0.370±0.29 0.088±0.00 0.556±0.22 0.044±0.00 N/A
ENST00000606197 N/A N/A N/A 1.665±0.00 0.233±0.00 0.174±0.00 0.183±0.00 0.193±0.00 0.313±0.00 0.194±0.00 0.069±0.00 0.366±0.22 0.044±0.02 N/A
ENST00000606336 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.517±0.00 N/A 0.392±0.00 0.109±0.00 0.304±0.00
ENST00000606851 N/A N/A N/A N/A 1.184±0.00 N/A 0.715±0.00 N/A N/A N/A N/A 1.480±0.17 N/A N/A
ENST00000607048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.090±0.03 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017064 ENSMUST00000017208 N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 7.741±10.49 N/A
ENSMUSG00000061330 ENSMUST00000077163 2.060±0.55 0.198±0.00 2.090±1.87 0.347±0.34 0.608±0.22 0.348±0.11 0.194±0.07 0.352±0.08 1.374±1.50 0.429±0.23 0.107±0.03 2.015±1.64 0.366±0.49 0.245±0.09
ENSMUSG00000085936 ENSMUST00000122881 0.515±0.00 0.392±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.323±0.00 N/A N/A N/A
ENSMUST00000125358 0.106±0.00 N/A N/A 2.193±0.00 0.182±0.00 0.300±0.14 0.162±0.01 0.445±0.14 0.156±0.05 1.620±0.58 0.250±0.15 0.730±0.37 0.117±0.06 1.191±0.00
ENSMUST00000134624 0.930±0.76 0.186±0.00 N/A 4.672±0.00 1.091±1.03 0.406±0.20 0.633±0.27 0.438±0.00 0.241±0.08 1.205±0.00 0.258±0.00 0.700±0.46 0.422±0.00 N/A
ENSMUST00000134787 0.094±0.02 0.083±0.00 N/A 1.513±0.00 0.374±0.13 0.092±0.01 0.165±0.04 0.215±0.06 0.063±0.01 0.808±0.00 0.087±0.04 0.517±0.21 0.055±0.00 N/A
ENSMUST00000148885 0.413±0.40 0.047±0.00 0.958±0.03 1.368±1.36 0.362±0.27 0.148±0.04 0.141±0.02 0.386±0.10 0.078±0.03 0.858±0.20 0.126±0.03 0.478±0.24 0.120±0.06 0.631±0.31
ENSMUST00000154298 N/A 0.236±0.00 N/A 0.326±0.00 0.869±0.16 0.265±0.00 0.530±0.00 1.176±0.54 0.342±0.00 N/A 0.396±0.10 1.365±0.26 0.524±0.32 2.075±0.00
ENSMUST00000155292 N/A N/A N/A N/A 0.533±0.00 N/A N/A N/A N/A N/A N/A 1.057±0.00 N/A N/A
ENSMUSG00000086785 ENSMUST00000134472 0.247±0.00 N/A 0.059±0.04 0.201±0.06 N/A N/A N/A 0.104±0.00 0.043±0.00 0.178±0.03 0.065±0.00 0.510±0.10 0.015±0.00 0.900±0.00

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