C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008VG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm844 VISTA 9606 4:173198350-173802625
GeneTranscriptPositionBiotype
ENSG00000109586 (GALNT7)
polypeptide N-acetylgalactosaminyltransferase 7 		ENST00000265000 (GALNT7-001) 173168753-173323967 protein_coding
ENST00000502407 (GALNT7-007) 173282435-173295760 processed_transcript
ENST00000503213 (GALNT7-005) 173304019-173318660 protein_coding
ENST00000505308 (GALNT7-003) 173292131-173322011 protein_coding
ENST00000506317 (GALNT7-006) 173298036-173314037 retained_intron
ENST00000512285 (GALNT7-004) 173168811-173298371 protein_coding
ENST00000515862 (GALNT7-002) 173315841-173323127 retained_intron
ENSG00000164104 (HMGB2)
high mobility group box 2 		ENST00000296503 (HMGB2-001) 173331695-173335125 protein_coding
ENST00000438704 (HMGB2-004) 173331701-173333672 protein_coding
ENST00000446922 (HMGB2-003) 173331701-173334391 protein_coding
ENST00000506267 (HMGB2-005) 173332889-173334249 protein_coding
ENST00000511316 (HMGB2-002) 173331705-173334432 retained_intron
ENSG00000164105 (SAP30)
Sin3A-associated protein, 30kDa 		ENST00000296504 (SAP30-001) 173370943-173377532 protein_coding
ENST00000504618 (SAP30-002) 173369969-173371232 processed_transcript
ENSG00000164106 (SCRG1)
stimulator of chondrogenesis 1 		ENST00000296506 (SCRG1-001) 173384701-173399536 protein_coding
ENST00000512188 (SCRG1-002) 173388162-173406380 nonsense_mediated_decay
ENSG00000164107 (HAND2)
heart and neural crest derivatives expressed 2 		ENST00000359562 (HAND2-001) 173526091-173530229 protein_coding
ENST00000503024 (HAND2-006) 173524969-173528912 nonsense_mediated_decay
ENST00000505300 (HAND2-003) 173528079-173530206 processed_transcript
ENST00000621866 (HAND2-201) 173526501-173529289 protein_coding
ENSG00000213370 (RANP6)
RAN, member RAS oncogene family pseudogene 6 		ENST00000413691 (RANP6-001) 173633728-173634371 processed_pseudogene
ENSG00000234801 (MORF4)
mortality factor 4 		ENST00000447135 (MORF4-001) 173615936-173616906 processed_pseudogene
ENSG00000242882 (RPL5P11)
ribosomal protein L5 pseudogene 11 		ENST00000498068 (RPL5P11-001) 173419245-173420137 processed_pseudogene
ENSG00000248774 (RP11-798M19.3)
 ENST00000507803 (RP11-798M19.3-001) 173322206-173329694 antisense
ENSG00000261646 (RP11-489G11.3)
 ENST00000563631 (RP11-489G11.3-001) 173467833-173470041 lincRNA
ENSG00000261672 (RP11-475B2.1)
 ENST00000561655 (RP11-475B2.1-001) 173593672-173594556 lincRNA
ENSG00000272870 (RP11-798M19.6)
 ENST00000608794 (RP11-798M19.6-003) 173363994-173369815 antisense
ENST00000608892 (RP11-798M19.6-004) 173369362-173370326 antisense
ENST00000609153 (RP11-798M19.6-001) 173363780-173370446 antisense
ENST00000609900 (RP11-798M19.6-002) 173367895-173369815 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0008VG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm844 VISTA 10090 8:57047180-57651136
GeneTranscriptPositionBiotype
ENSMUSG00000031608 (Galnt7)
UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 		ENSMUST00000034021 (Galnt7-001) 57523828-57653031 protein_coding
ENSMUST00000110316 (Galnt7-002) 57524700-57653003 protein_coding
ENSMUST00000139417 (Galnt7-004) 57526024-57538453 processed_transcript
ENSMUST00000156907 (Galnt7-003) 57541995-57653032 retained_intron
ENSMUSG00000031609 (Sap30)
sin3 associated polypeptide 		ENSMUST00000034022 (Sap30-001) 57482707-57487860 protein_coding
ENSMUSG00000031610 (Scrg1)
scrapie responsive gene 1 		ENSMUST00000034023 (Scrg1-201) 57455923-57477585 protein_coding
ENSMUSG00000038193 (Hand2)
heart and neural crest derivatives expressed transcript 2 		ENSMUST00000040104 (Hand2-001) 57320983-57324517 protein_coding
ENSMUSG00000054717 (Hmgb2)
high mobility group box 2 		ENSMUST00000067925 (Hmgb2-201) 57511843-57515999 protein_coding
ENSMUSG00000070025 (Gm10284)
predicted pseudogene 10284 		ENSMUST00000145057 (Gm10284-001) 57550299-57551303 processed_pseudogene
ENSMUSG00000096917 (2500002B13Rik)
RIKEN cDNA 2500002B13 gene 		ENSMUST00000180690 (2500002B13Rik-201) 57488054-57508877 lincRNA
ENSMUSG00000097910 (5033428I22Rik)
RIKEN cDNA 5033428I22 gene 		ENSMUST00000181638 (5033428I22Rik-201) 57332118-57340682 lincRNA
ENSMUSG00000100348 (RP24-459A4.3)
predicted gene 28063 		ENSMUST00000187718 (RP24-459A4.3-001) 57321005-57324233 antisense
ENSMUST00000189098 (RP24-459A4.3-002) 57320987-57324233 antisense
ENSMUSG00000100510 (RP24-459A4.1)
expressed sequence AV026068 		ENSMUST00000185635 (RP24-459A4.1-003) 57314288-57320748 retained_intron
ENSMUST00000185793 (RP24-459A4.1-002) 57304265-57320404 retained_intron
ENSMUST00000185946 (RP24-459A4.1-006) 57304265-57320325 lincRNA
ENSMUST00000186214 (RP24-459A4.1-008) 57304271-57305358 lincRNA
ENSMUST00000186386 (RP24-459A4.1-001) 57304265-57320859 lincRNA
ENSMUST00000187461 (RP24-459A4.1-005) 57306947-57320767 retained_intron
ENSMUST00000189143 (RP24-459A4.1-004) 57305243-57320830 retained_intron
ENSMUST00000189169 (RP24-459A4.1-007) 57304265-57320735 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109586 ENST00000265000 1.022±0.00 1.099±0.00 N/A 0.669±0.22 2.263±0.73 3.814±0.32 0.588±0.51 2.138±1.97 N/A 1.668±0.04 0.113±0.08 3.815±1.47 3.748±1.39 2.933±0.75
ENST00000502407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503213 N/A N/A N/A N/A N/A N/A N/A 1.277±0.00 N/A N/A N/A N/A N/A N/A
ENST00000505308 0.943±0.00 N/A N/A 1.114±0.00 N/A N/A N/A N/A 1.189±0.00 N/A N/A 2.903±0.00 N/A 2.166±0.00
ENST00000506317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.081±0.00 16.447±0.00 6.858±0.00 N/A
ENST00000512285 N/A N/A 0.543±0.00 N/A 2.467±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A N/A N/A
ENSG00000164104 ENST00000296503 N/A N/A 0.367±0.00 1.826±0.32 0.983±0.00 4.252±0.00 1.206±0.00 0.639±0.00 0.529±0.00 2.207±0.00 0.675±0.00 5.877±1.57 N/A 23.901±15.94
ENST00000438704 45.826±0.00 18.477±0.00 N/A 8.188±6.79 8.299±5.77 46.310±0.00 5.995±5.21 19.539±0.00 2.317±0.79 21.656±0.00 14.648±0.00 71.057±34.65 48.649±26.64 74.049±24.98
ENST00000446922 16.404±0.00 9.955±0.00 0.779±0.00 4.838±0.00 6.868±0.00 10.329±6.76 4.759±0.00 4.017±0.00 0.937±0.40 11.717±10.04 N/A 16.581±12.45 14.875±9.22 14.343±0.00
ENST00000506267 N/A N/A N/A N/A N/A N/A 1.002±0.00 0.434±0.00 3.206±0.00 N/A 1.631±0.00 N/A N/A N/A
ENST00000511316 N/A N/A 0.730±0.00 N/A N/A N/A N/A N/A 0.888±0.00 0.955±0.00 N/A N/A N/A N/A
ENSG00000164105 ENST00000296504 6.445±0.00 2.199±0.00 0.113±0.00 5.761±1.48 2.061±0.17 6.646±4.25 3.258±2.46 3.396±2.63 3.013±0.69 2.704±0.52 2.066±1.35 5.754±2.66 3.199±0.81 10.804±5.77
ENST00000504618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000164106 ENST00000296506 0.084±0.00 0.589±0.00 0.030±0.00 3.191±1.61 0.158±0.06 0.381±0.01 0.087±0.00 0.216±0.00 0.326±0.30 0.167±0.00 0.077±0.02 0.176±0.12 0.039±0.01 1.133±0.22
ENST00000512188 N/A 2.231±0.00 N/A 26.075±0.00 N/A 3.091±0.00 N/A 0.820±0.00 N/A 0.744±0.00 N/A 0.416±0.26 0.031±0.01 5.159±3.49
ENSG00000164107 ENST00000359562 0.333±0.00 N/A N/A N/A 0.641±0.00 41.808±0.00 13.836±7.37 0.693±0.64 3.361±2.15 N/A N/A 5.376±2.90 14.338±7.46 1.533±1.25
ENST00000503024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505300 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621866 N/A 0.448±0.00 N/A N/A 1.018±0.00 1.653±0.00 N/A N/A 2.561±0.00 0.483±0.00 0.095±0.00 7.886±6.35 29.715±15.35 N/A
ENSG00000213370 ENST00000413691 0.020±0.00 N/A N/A 0.042±0.00 0.041±0.00 0.038±0.00 0.019±0.00 N/A 0.036±0.00 0.018±0.00 0.036±0.00 N/A N/A N/A
ENSG00000234801 ENST00000447135 0.084±0.00 0.037±0.00 N/A 0.104±0.08 0.132±0.00 0.034±0.00 0.011±0.00 0.207±0.00 0.022±0.00 0.011±0.00 0.152±0.00 0.076±0.00 0.039±0.00 0.056±0.00
ENSG00000242882 ENST00000498068 0.054±0.00 0.137±0.00 N/A 0.266±0.23 0.053±0.00 0.453±0.39 0.052±0.00 0.068±0.00 0.112±0.10 0.125±0.04 0.074±0.00 0.042±0.03 N/A 0.025±0.00
ENSG00000248774 ENST00000507803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.096±0.00 8.675±0.00
ENSG00000261646 ENST00000563631 0.045±0.00 0.008±0.00 0.195±0.00 0.073±0.06 0.019±0.00 0.022±0.00 0.012±0.00 0.266±0.00 N/A 0.495±0.00 N/A 0.052±0.01 N/A 0.015±0.00
ENSG00000261672 ENST00000561655 N/A N/A N/A N/A 0.078±0.00 0.611±0.00 0.117±0.08 0.346±0.00 0.099±0.00 N/A N/A 0.537±0.15 0.256±0.12 0.162±0.13
ENSG00000272870 ENST00000608794 0.276±0.00 0.903±0.00 0.507±0.00 2.002±0.26 0.461±0.00 1.306±0.60 0.260±0.00 0.396±0.00 1.325±0.74 1.036±0.12 0.126±0.00 0.791±0.44 0.194±0.00 1.170±0.00
ENST00000608892 1.582±0.00 N/A N/A N/A 0.718±0.00 N/A N/A N/A N/A N/A N/A N/A 0.389±0.00 N/A
ENST00000609153 0.736±0.00 0.695±0.00 0.429±0.00 0.880±0.33 0.421±0.00 2.741±0.00 0.251±0.20 0.247±0.00 0.071±0.00 0.210±0.00 0.438±0.00 1.592±0.22 0.452±0.42 1.032±0.00
ENST00000609900 0.081±0.00 0.377±0.00 N/A N/A 0.063±0.00 N/A 0.057±0.02 0.038±0.00 0.199±0.00 N/A N/A 0.052±0.04 0.039±0.01 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031608 ENSMUST00000034021 0.904±0.58 0.955±0.00 4.727±0.41 0.908±0.39 1.032±0.29 17.273±3.54 0.794±0.19 0.938±0.41 1.056±0.89 1.285±0.17 0.531±0.12 2.606±1.55 4.590±1.94 0.929±0.61
ENSMUST00000110316 1.113±0.69 N/A 1.262±0.05 1.084±0.00 0.848±0.38 5.944±1.26 0.512±0.07 0.725±0.22 0.523±0.17 0.609±0.22 0.196±0.03 2.027±0.86 1.877±0.97 1.311±0.05
ENSMUST00000139417 N/A N/A N/A 2.344±0.00 1.383±0.33 N/A N/A 0.859±0.00 0.295±0.00 0.966±0.00 N/A N/A N/A N/A
ENSMUST00000156907 N/A N/A N/A N/A 0.578±0.19 N/A N/A N/A 0.160±0.03 N/A N/A 1.105±0.05 N/A N/A
ENSMUSG00000031609 ENSMUST00000034022 4.836±3.18 10.519±2.64 11.108±1.70 17.364±11.95 4.625±2.83 8.239±0.96 3.372±1.12 23.790±6.00 6.890±4.90 5.996±1.43 2.602±0.49 9.065±3.47 5.411±1.12 8.958±2.84
ENSMUSG00000031610 ENSMUST00000034023 0.058±0.00 0.177±0.06 0.054±0.00 2.597±1.26 0.117±0.03 0.351±0.12 0.134±0.03 0.498±0.10 0.428±0.56 0.477±0.21 0.068±0.03 0.069±0.00 0.066±0.01 N/A
ENSMUSG00000038193 ENSMUST00000040104 7.246±7.23 22.866±6.77 19.024±0.82 0.086±0.06 0.023±0.01 4.919±1.80 5.864±1.78 0.134±0.06 1.883±0.32 0.124±0.03 0.053±0.02 2.334±0.91 7.949±4.12 0.140±0.20
ENSMUSG00000054717 ENSMUST00000067925 3.226±2.51 2.228±0.65 6.378±1.14 11.867±8.85 5.250±3.76 16.679±4.86 0.647±0.15 2.829±0.31 72.924±94.50 4.456±0.73 0.778±0.19 9.329±4.24 43.448±28.54 18.167±8.93
ENSMUSG00000070025 ENSMUST00000145057 0.038±0.01 N/A 0.294±0.00 0.049±0.03 0.728±0.00 N/A 0.046±0.02 0.043±0.01 0.040±0.02 0.033±0.00 0.358±0.10 0.074±0.00 0.147±0.14 0.029±0.00
ENSMUSG00000096917 ENSMUST00000180690 0.556±0.01 0.239±0.10 1.227±0.25 0.784±0.62 0.376±0.20 0.432±0.09 N/A 1.484±0.35 1.115±0.88 0.366±0.03 0.633±0.15 0.489±0.21 0.416±0.20 0.329±0.19
ENSMUSG00000097910 ENSMUST00000181638 N/A 0.121±0.05 0.860±0.00 0.004±0.00 N/A 0.117±0.05 0.232±0.00 0.016±0.00 0.071±0.04 0.019±0.00 0.045±0.00 0.107±0.05 0.108±0.05 0.025±0.01
ENSMUSG00000100348 ENSMUST00000187718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 N/A 6.820±0.48 N/A
ENSMUST00000189098 N/A N/A N/A N/A N/A N/A N/A 0.710±0.13 N/A N/A 0.277±0.00 N/A N/A N/A
ENSMUSG00000100510 ENSMUST00000185635 N/A 0.450±0.00 N/A 0.022±0.00 N/A 0.473±0.14 4.777±0.83 0.140±0.00 0.440±0.00 0.345±0.00 0.097±0.00 0.523±0.30 N/A N/A
ENSMUST00000185793 N/A N/A N/A N/A N/A 0.422±0.00 N/A N/A 0.675±0.13 N/A N/A 0.620±0.00 N/A N/A
ENSMUST00000185946 3.629±0.67 0.780±0.00 N/A N/A N/A 0.613±0.51 8.174±1.62 0.124±0.00 0.918±0.41 0.226±0.07 0.160±0.00 0.906±0.00 1.312±0.00 0.139±0.00
ENSMUST00000186214 N/A N/A N/A 0.040±0.00 N/A N/A N/A 0.104±0.00 0.265±0.00 N/A 0.048±0.00 0.526±0.00 N/A 0.234±0.03
ENSMUST00000186386 N/A 0.739±0.00 N/A N/A N/A 0.517±0.00 3.312±0.37 N/A 0.318±0.09 0.179±0.00 N/A 0.186±0.00 0.712±0.00 N/A
ENSMUST00000187461 4.283±2.96 1.857±0.61 N/A 0.097±0.07 0.366±0.11 1.170±0.28 6.884±1.26 0.173±0.09 0.726±0.32 0.403±0.09 0.106±0.00 0.981±0.64 5.160±0.00 0.151±0.05
ENSMUST00000189143 2.439±2.32 3.654±1.08 N/A N/A N/A 1.571±0.90 10.087±0.63 N/A 0.345±0.00 0.652±0.00 N/A 0.975±0.52 N/A N/A
ENSMUST00000189169 3.947±0.59 0.801±0.06 N/A N/A N/A 0.523±0.28 3.637±0.69 0.120±0.07 0.404±0.17 N/A N/A 0.395±0.22 2.184±1.23 N/A

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