C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008WJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm397 VISTA 9606 4:76511627-77112790
GeneTranscriptPositionBiotype
ENSG00000118816 (CCNI)
cyclin I 		ENST00000237654 (CCNI-001) 77047158-77076005 protein_coding
ENST00000504697 (CCNI-009) 77056065-77065080 processed_transcript
ENST00000505609 (CCNI-003) 77056044-77074910 protein_coding
ENST00000506614 (CCNI-007) 77055234-77056485 retained_intron
ENST00000507788 (CCNI-004) 77058559-77075989 protein_coding
ENST00000511943 (CCNI-005) 77055323-77075693 nonsense_mediated_decay
ENST00000513774 (CCNI-002) 77058510-77075332 protein_coding
ENST00000515468 (CCNI-008) 77048115-77056049 protein_coding
ENST00000515790 (CCNI-006) 77066165-77075620 retained_intron
ENSG00000138758 (SEPT11)
septin 11 		ENST00000264893 (SEPT11-001) 76949703-77038614 protein_coding
ENST00000502401 (SEPT11-012) 77028717-77039115 protein_coding
ENST00000502584 (SEPT11-006) 76949751-77032158 protein_coding
ENST00000504460 (SEPT11-016) 77009780-77015017 processed_transcript
ENST00000504637 (SEPT11-008) 76949862-77011744 protein_coding
ENST00000505788 (SEPT11-002) 76949809-77040384 protein_coding
ENST00000506047 (SEPT11-003) 77014871-77021639 retained_intron
ENST00000506731 (SEPT11-015) 77020532-77039206 protein_coding
ENST00000510515 (SEPT11-004) 76949837-77034821 protein_coding
ENST00000510641 (SEPT11-005) 76949766-77030836 protein_coding
ENST00000512333 (SEPT11-011) 76987788-77011919 processed_transcript
ENST00000512575 (SEPT11-010) 76949836-77034667 processed_transcript
ENST00000512778 (SEPT11-009) 76985024-77011775 protein_coding
ENST00000513373 (SEPT11-013) 77030783-77040100 processed_transcript
ENST00000513697 (SEPT11-007) 77030897-77039326 processed_transcript
ENST00000515671 (SEPT11-014) 77034924-77040152 processed_transcript
ENSG00000138771 (SHROOM3)
shroom family member 3 		ENST00000296043 (SHROOM3-001) 76435100-76783253 protein_coding
ENST00000466541 (SHROOM3-006) 76436146-76559576 processed_transcript
ENST00000469923 (SHROOM3-007) 76555614-76754586 processed_transcript
ENST00000473602 (SHROOM3-013) 76709767-76738993 processed_transcript
ENST00000481002 (SHROOM3-008) 76586255-76738835 processed_transcript
ENST00000484236 (SHROOM3-011) 76586313-76587265 processed_transcript
ENST00000485780 (SHROOM3-010) 76586286-76645645 processed_transcript
ENST00000486758 (SHROOM3-004) 76689571-76742130 retained_intron
ENST00000490690 (SHROOM3-009) 76586140-76645354 processed_transcript
ENST00000497440 (SHROOM3-012) 76436112-76645645 processed_transcript
ENSG00000186212 (SOWAHB)
sosondowah ankyrin repeat domain family member B 		ENST00000334306 (SOWAHB-001) 76894928-76898147 protein_coding
ENSG00000214062 (RPL7P17)
ribosomal protein L7 pseudogene 17 		ENST00000470927 (RPL7P17-001) 77082403-77083126 processed_pseudogene
ENSG00000231335 (AC107072.2)
 ENST00000425645 (AC107072.2-001) 76637623-76644368 sense_intronic
ENSG00000233860 (RP11-359D14.2)
 ENST00000452412 (RP11-359D14.2-001) 76756960-76758474 antisense
ENSG00000234036 (TXNP6)
thioredoxin pseudogene 6 		ENST00000510190 (TXNP6-001) 76958860-76959169 processed_pseudogene
ENSG00000242727 (RP11-123J14.1)
 ENST00000485829 (RP11-123J14.1-001) 76891034-76891445 processed_pseudogene
ENSG00000264124 (AC104687.1)
 ENST00000580319 (AC104687.1-201) 76853964-76854060 miRNA
ENSG00000270244 (RP11-123J14.4)
 ENST00000604442 (RP11-123J14.4-001) 76886029-76886370 processed_pseudogene
ENSG00000271676 (RP11-1E1.2)
 ENST00000603335 (RP11-1E1.2-001) 77112495-77113458 processed_pseudogene
CIL_0008WJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm397 VISTA 10090 5:92697267-93298294
GeneTranscriptPositionBiotype
ENSMUSG00000029381 (Shroom3)
shroom family member 3 		ENSMUST00000113051 (Shroom3-005) 92897993-92965308 protein_coding
ENSMUST00000113054 (Shroom3-003) 92809378-92965318 protein_coding
ENSMUST00000113055 (Shroom3-001) 92683435-92965314 protein_coding
ENSMUST00000168878 (Shroom3-002) 92683625-92964762 protein_coding
ENSMUST00000172706 (Shroom3-006) 92925407-92940455 protein_coding
ENSMUST00000172752 (Shroom3-007) 92962039-92964790 retained_intron
ENSMUST00000172849 (Shroom3-004) 92809470-92835836 processed_transcript
ENSMUSG00000029384 (2010109A12Rik)
RIKEN cDNA 2010109A12 gene 		ENSMUST00000031330 (2010109A12Rik-001) 93206518-93213475 protein_coding
ENSMUSG00000029385 (Ccng2)
cyclin G2 		ENSMUST00000031331 (Ccng2-001) 93267257-93276231 protein_coding
ENSMUST00000121127 (Ccng2-003) 93268314-93276224 protein_coding
ENSMUST00000130183 (Ccng2-002) 93267639-93276225 retained_intron
ENSMUST00000149329 (Ccng2-006) 93268708-93273485 retained_intron
ENSMUST00000152097 (Ccng2-004) 93267589-93268454 processed_transcript
ENSMUST00000153260 (Ccng2-005) 93267601-93269716 processed_transcript
ENSMUSG00000045314 (Sowahb)
sosondowah ankyrin repeat domain family member B 		ENSMUST00000061328 (Sowahb-201) 93041123-93045022 protein_coding
ENSMUSG00000058013 (Sept11)
septin 11 		ENSMUST00000074733 (Sept11-201) 93093457-93174958 protein_coding
ENSMUSG00000063015 (Ccni)
cyclin I 		ENSMUST00000058550 (Ccni-001) 93181933-93206495 protein_coding
ENSMUST00000123033 (Ccni-004) 93187453-93188220 retained_intron
ENSMUST00000144514 (Ccni-002) 93189564-93206428 protein_coding
ENSMUST00000151568 (Ccni-003) 93187762-93205927 protein_coding
ENSMUSG00000083700 (Gm2986)
predicted gene 2986 		ENSMUST00000121603 (Gm2986-001) 93195798-93196179 processed_pseudogene
ENSMUSG00000092266 (Gm20500)
predicted gene 20500 		ENSMUST00000174621 (Gm20500-001) 92736205-92737442 processed_transcript
ENSMUSG00000097198 (9330159N05Rik)
RIKEN cDNA 9330159N05 gene 		ENSMUST00000180541 (9330159N05Rik-201) 93044720-93048430 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008WJ_0001ENSG00000118816ENST00000237654ENST00000515468ENSG00000138758ENST00000264893ENST00000502584ENST00000505788ENST00000506731ENSG00000138771ENST00000296043ENST00000469923ENST00000473602ENST00000486758ENSG00000186212ENST00000334306ENSG00000214062ENST00000470927ENSG00000231335ENST00000425645ENSG00000233860ENST00000452412ENSG00000234036ENST00000510190ENSG00000242727ENST00000485829ENSG00000264124ENST00000580319ENSG00000270244ENST00000604442ENSG00000271676ENST00000603335CIL_0008WJ_0002ENSMUSG00000029381ENSMUST00000113051ENSMUST00000113054ENSMUST00000113055ENSMUST00000168878ENSMUST00000172752ENSMUSG00000029384ENSMUST00000031330ENSMUSG00000029385ENSMUST00000031331ENSMUST00000121127ENSMUST00000130183ENSMUST00000152097ENSMUST00000153260ENSMUSG00000045314ENSMUST00000061328ENSMUSG00000058013ENSMUST00000074733ENSMUSG00000063015ENSMUST00000058550ENSMUST00000123033ENSMUSG00000083700ENSMUST00000121603ENSMUSG00000092266ENSMUST00000174621ENSMUSG00000097198ENSMUST00000180541
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118816 ENST00000237654 219.442±0.00 118.246±0.00 15.111±0.00 98.729±71.49 81.406±61.86 132.384±113.12 62.298±49.38 70.218±57.48 27.155±2.59 95.701±81.71 59.436±45.01 89.129±76.44 54.641±7.08 127.544±92.92
ENST00000504697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 67.724±0.00 81.220±0.00 85.042±0.00
ENST00000515790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138758 ENST00000264893 21.153±0.00 7.161±0.00 3.078±0.00 6.709±2.48 19.624±8.74 9.760±0.96 2.988±1.56 26.763±0.00 4.454±0.96 10.269±2.50 1.205±0.71 6.777±2.55 16.272±4.20 6.036±4.01
ENST00000502401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502584 14.727±0.00 2.698±0.00 N/A 7.060±0.12 N/A 5.004±0.00 1.844±0.00 N/A N/A N/A 1.189±0.00 4.053±0.00 N/A 2.863±1.95
ENST00000504460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505788 N/A N/A N/A 6.399±0.38 N/A N/A N/A N/A N/A N/A 1.062±0.00 N/A N/A N/A
ENST00000506047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.641±0.00 31.659±0.00 2.382±0.00
ENST00000510515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138771 ENST00000296043 N/A N/A N/A 0.548±0.18 N/A N/A N/A 0.953±0.00 N/A N/A 0.005±0.00 N/A N/A N/A
ENST00000466541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.00 N/A N/A N/A
ENST00000473602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A
ENST00000481002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486758 N/A N/A N/A 0.634±0.00 4.450±0.00 6.531±0.00 N/A 2.667±0.00 3.671±0.00 1.589±0.00 0.120±0.00 6.373±0.00 N/A N/A
ENST00000490690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000186212 ENST00000334306 0.029±0.00 0.015±0.00 1.486±0.00 1.971±0.65 0.407±0.19 2.278±1.56 0.007±0.00 1.235±0.00 N/A 0.495±0.15 N/A 0.665±0.50 0.554±0.20 0.080±0.06
ENSG00000214062 ENST00000470927 0.019±0.00 0.159±0.00 N/A N/A 0.020±0.00 N/A 0.069±0.00 0.141±0.00 N/A N/A N/A 0.167±0.15 N/A 0.036±0.00
ENSG00000231335 ENST00000425645 0.078±0.00 0.249±0.00 N/A 0.356±0.00 0.343±0.00 N/A 0.523±0.00 0.170±0.00 N/A N/A N/A 0.708±0.51 N/A 0.075±0.00
ENSG00000233860 ENST00000452412 0.178±0.00 N/A 1.348±0.00 0.023±0.00 0.222±0.00 0.376±0.00 0.020±0.00 N/A 0.365±0.00 0.363±0.00 N/A 0.234±0.00 0.155±0.00 0.081±0.02
ENSG00000234036 ENST00000510190 0.207±0.00 N/A 3.091±0.00 N/A N/A 2.422±0.00 N/A 0.201±0.00 0.036±0.00 3.344±0.00 N/A 0.132±0.00 N/A N/A
ENSG00000242727 ENST00000485829 N/A N/A N/A N/A N/A 1.456±0.00 N/A N/A N/A N/A 0.031±0.00 N/A N/A 0.119±0.00
ENSG00000264124 ENST00000580319 N/A 0.359±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270244 ENST00000604442 N/A N/A N/A 0.340±0.00 N/A N/A N/A 0.626±0.00 N/A 0.477±0.00 N/A 0.123±0.00 N/A 9.410±0.00
ENSG00000271676 ENST00000603335 0.037±0.00 0.081±0.00 N/A N/A 0.042±0.00 N/A 0.020±0.00 N/A N/A N/A 0.018±0.00 0.036±0.01 N/A 0.153±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029381 ENSMUST00000113051 1.913±0.24 1.118±0.25 7.892±2.06 1.437±0.13 2.598±1.12 27.840±2.53 1.546±0.41 0.767±0.12 0.260±0.11 5.569±0.60 0.051±0.02 3.382±0.99 2.731±1.22 3.021±0.40
ENSMUST00000113054 0.945±0.29 N/A 2.125±0.26 0.633±0.00 1.000±0.39 13.258±2.44 3.853±1.22 4.806±0.68 0.193±0.10 15.001±2.19 N/A 9.228±1.95 1.309±0.30 3.934±0.88
ENSMUST00000113055 0.925±0.01 0.212±0.00 N/A 0.505±0.02 N/A N/A N/A 1.224±0.43 0.812±0.29 4.534±0.28 N/A 1.459±0.00 N/A N/A
ENSMUST00000168878 N/A N/A N/A 0.424±0.00 N/A N/A N/A N/A 0.191±0.00 N/A 0.070±0.03 4.158±0.00 N/A 2.053±1.42
ENSMUST00000172706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172752 N/A N/A N/A 0.675±0.00 N/A N/A N/A N/A N/A N/A 0.107±0.04 N/A N/A 5.704±0.00
ENSMUST00000172849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029384 ENSMUST00000031330 0.193±0.10 0.756±0.00 0.219±0.00 0.234±0.13 0.347±0.12 0.326±0.00 0.098±0.00 0.140±0.06 0.322±0.10 0.137±0.00 0.146±0.05 0.706±0.19 0.289±0.20 6.801±2.04
ENSMUSG00000029385 ENSMUST00000031331 5.969±2.01 1.723±0.00 6.959±0.05 14.971±11.15 5.337±0.92 10.366±2.60 3.028±0.59 5.350±0.83 3.699±2.28 6.172±1.73 4.221±1.25 5.575±1.35 2.855±1.77 1.854±0.85
ENSMUST00000121127 2.884±0.60 3.336±0.65 1.433±0.00 5.778±1.56 4.037±0.34 8.264±1.46 0.908±0.08 N/A 1.275±0.48 2.990±0.48 1.793±0.38 6.832±3.97 1.919±1.06 1.225±0.28
ENSMUST00000130183 1.723±0.00 1.275±0.00 1.432±0.09 3.197±1.87 1.910±0.54 2.778±0.00 0.440±0.14 0.737±0.00 0.710±0.25 1.445±0.29 0.360±0.03 2.400±0.46 0.465±0.21 N/A
ENSMUST00000149329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152097 N/A N/A N/A N/A N/A 142.295±19.76 N/A 18.219±0.00 5.904±3.67 N/A N/A 36.655±7.62 N/A N/A
ENSMUST00000153260 11.525±0.00 44.052±16.45 N/A 9.047±0.00 43.233±6.75 115.695±24.95 N/A 23.447±0.00 3.322±2.45 29.120±18.60 N/A 32.109±13.95 N/A N/A
ENSMUSG00000045314 ENSMUST00000061328 0.371±0.05 N/A 1.112±0.10 0.854±1.18 0.310±0.11 9.361±0.90 0.018±0.00 4.362±1.25 1.733±0.96 1.137±0.10 N/A 0.239±0.08 2.104±2.09 0.025±0.02
ENSMUSG00000058013 ENSMUST00000074733 18.843±4.78 2.967±0.82 8.113±1.39 30.285±18.26 17.133±5.22 8.538±0.92 5.289±0.40 22.019±3.54 6.648±4.48 23.208±1.69 4.512±1.05 19.517±8.03 24.852±12.15 0.799±0.26
ENSMUSG00000063015 ENSMUST00000058550 70.138±11.54 24.319±11.36 39.568±6.34 56.736±12.32 65.297±21.28 80.686±27.39 36.115±6.11 68.029±11.43 32.134±9.18 57.218±10.38 16.807±1.06 42.006±10.23 17.881±5.62 76.690±31.11
ENSMUST00000123033 N/A N/A N/A N/A 95.118±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083700 ENSMUST00000121603 0.467±0.14 0.844±0.22 N/A 1.800±0.93 0.378±0.09 0.910±1.09 N/A 0.261±0.18 0.501±0.23 0.564±0.26 0.298±0.12 0.753±0.34 0.503±0.25 0.699±0.23
ENSMUSG00000092266 ENSMUST00000174621 N/A N/A 0.054±0.00 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.542±0.17
ENSMUSG00000097198 ENSMUST00000180541 N/A 0.016±0.00 N/A 0.252±0.00 0.140±0.06 1.933±0.25 0.011±0.00 1.044±0.00 0.273±0.14 N/A N/A 0.064±0.02 N/A 0.012±0.01

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