C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008YG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2412 VISTA 9606 4:128057618-128659090
GeneTranscriptPositionBiotype
ENSG00000138709 (LARP1B)
La ribonucleoprotein domain family, member 1B 		ENST00000326639 (LARP1B-001) 128061268-128211988 protein_coding
ENST00000394288 (LARP1B-003) 128061335-128108901 protein_coding
ENST00000432347 (LARP1B-004) 128061348-128108901 protein_coding
ENST00000503725 (LARP1B-008) 128179347-128222595 processed_transcript
ENST00000506199 (LARP1B-010) 128179314-128222931 processed_transcript
ENST00000507259 (LARP1B-007) 128122117-128222926 nonsense_mediated_decay
ENST00000507377 (LARP1B-006) 128077841-128122352 protein_coding
ENST00000508648 (LARP1B-009) 128179314-128222595 processed_transcript
ENST00000508819 (LARP1B-002) 128061312-128179410 protein_coding
ENST00000512292 (LARP1B-005) 128061286-128123869 protein_coding
ENSG00000164040 (PGRMC2)
progesterone receptor membrane component 2 		ENST00000296425 (PGRMC2-007) 128269242-128287811 protein_coding
ENST00000394276 (PGRMC2-002) 128269256-128273061 protein_coding
ENST00000503588 (PGRMC2-005) 128270871-128286787 protein_coding
ENST00000503872 (PGRMC2-004) 128270705-128286878 protein_coding
ENST00000509070 (PGRMC2-006) 128271359-128287388 nonsense_mediated_decay
ENST00000512483 (PGRMC2-003) 128270612-128288203 protein_coding
ENST00000520121 (PGRMC2-001) 128269242-128288829 protein_coding
ENST00000613358 (PGRMC2-201) 128269237-128288822 protein_coding
ENSG00000241651 (RP11-214O14.1)
 ENST00000475247 (RP11-214O14.1-001) 128069014-128069612 processed_pseudogene
ENSG00000248187 (RP11-184M15.1)
 ENST00000514265 (RP11-184M15.1-001) 128567972-128570531 lincRNA
ENSG00000248394 (FOSL1P1)
FOS-like antigen 1 pseudogene 1 		ENST00000511041 (FOSL1P1-001) 128155389-128156204 processed_pseudogene
ENSG00000248802 (RP11-184M15.2)
 ENST00000487657 (RP11-184M15.2-002) 128582999-128601400 lincRNA
ENST00000509360 (RP11-184M15.2-001) 128599439-128601407 lincRNA
ENSG00000251432 (RP11-420A23.1)
 ENST00000504984 (RP11-420A23.1-002) 128455169-128470647 lincRNA
ENST00000505133 (RP11-420A23.1-005) 128292751-128466661 lincRNA
ENST00000509834 (RP11-420A23.1-004) 128292933-128474996 lincRNA
ENST00000511497 (RP11-420A23.1-001) 128428070-128519394 lincRNA
ENST00000513851 (RP11-420A23.1-003) 128470506-128471080 lincRNA
ENSG00000273077 (RP11-130C6.1)
 ENST00000608228 (RP11-130C6.1-001) 128552590-128553416 lincRNA
CIL_0008YG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2412 VISTA 10090 3:40857758-41459600
GeneTranscriptPositionBiotype
ENSMUSG00000025762 (Larp1b)
La ribonucleoprotein domain family, member 1B 		ENSMUST00000026862 (Larp1b-201) 41033944-41040196 protein_coding
ENSMUST00000065411 (Larp1b-202) 41021939-41040234 protein_coding
ENSMUST00000099121 (Larp1b-203) 41024373-41039236 protein_coding
ENSMUSG00000037814 (Larp1b)
 ENSMUST00000048490 (Larp1b-204) 40950631-40977793 protein_coding
ENSMUSG00000037818 (3110057O12Rik)
RIKEN cDNA 3110057O12 gene 		ENSMUST00000060415 (3110057O12Rik-007) 40894263-40917098 protein_coding
ENSMUST00000108077 (3110057O12Rik-201) 40894322-40937137 protein_coding
ENSMUST00000108078 (3110057O12Rik-202) 40846970-40936307 protein_coding
ENSMUST00000159057 (3110057O12Rik-004) 40930545-40936695 processed_transcript
ENSMUST00000159227 (3110057O12Rik-002) 40894277-40938136 nonsense_mediated_decay
ENSMUST00000159274 (3110057O12Rik-005) 40894306-40923778 protein_coding
ENSMUST00000159421 (3110057O12Rik-006) 40894345-40917406 protein_coding
ENSMUST00000159774 (3110057O12Rik-001) 40894145-40938138 protein_coding
ENSMUST00000161111 (3110057O12Rik-003) 40894324-40937154 nonsense_mediated_decay
ENSMUSG00000049940 (Pgrmc2)
progesterone receptor membrane component 2 		ENSMUST00000058578 (Pgrmc2-001) 41066326-41083046 protein_coding
ENSMUST00000124636 (Pgrmc2-002) 41068520-41070670 retained_intron
ENSMUSG00000064927 (Gm22043)
predicted gene, 22043 		ENSMUST00000082993 (Gm22043-201) 40992693-40992850 snRNA
ENSMUSG00000074619 (1700034I23Rik)
RIKEN cDNA 1700034I23 gene 		ENSMUST00000099123 (1700034I23Rik-001) 40900196-40902543 protein_coding
ENSMUSG00000097583 (6430590A07Rik)
RIKEN cDNA 6430590A07 gene 		ENSMUST00000181813 (6430590A07Rik-201) 40885897-40894123 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YG_0001ENSG00000138709ENST00000326639ENST00000394288ENST00000432347ENST00000512292ENSG00000164040ENST00000296425ENST00000394276ENST00000503588ENST00000503872ENST00000512483ENST00000520121ENSG00000241651ENST00000475247ENSG00000248187ENST00000514265ENSG00000248394ENST00000511041ENSG00000248802ENST00000487657ENST00000509360ENSG00000251432ENST00000504984ENST00000505133ENST00000509834ENST00000511497ENST00000513851ENSG00000273077ENST00000608228CIL_0008YG_0002ENSMUSG00000025762ENSMUST00000026862ENSMUST00000065411ENSMUST00000099121ENSMUSG00000037814ENSMUST00000048490ENSMUSG00000037818ENSMUST00000060415ENSMUST00000108077ENSMUST00000108078ENSMUST00000159057ENSMUST00000159227ENSMUST00000159421ENSMUST00000159774ENSMUST00000161111ENSMUSG00000049940ENSMUST00000058578ENSMUST00000124636ENSMUSG00000064927ENSMUST00000082993ENSMUSG00000074619ENSMUST00000099123ENSMUSG00000097583ENSMUST00000181813
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138709 ENST00000326639 N/A 0.356±0.00 N/A 2.218±0.00 0.741±0.04 0.611±0.00 0.403±0.00 2.728±1.26 2.847±0.00 N/A N/A 0.759±0.00 0.585±0.25 10.102±0.00
ENST00000394288 4.331±0.00 2.113±0.00 N/A 3.552±0.00 1.876±0.00 2.118±0.00 2.484±0.00 5.707±0.12 4.859±3.03 2.297±1.42 3.141±2.48 3.691±2.39 3.519±1.37 12.913±0.00
ENST00000432347 N/A 0.710±0.00 N/A 0.895±0.00 0.937±0.00 2.696±0.00 N/A N/A N/A 1.190±0.00 N/A 1.312±0.64 N/A N/A
ENST00000503725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512292 N/A N/A 0.553±0.00 N/A 0.954±0.00 1.198±0.54 N/A N/A N/A 0.753±0.05 0.225±0.00 1.199±0.67 N/A N/A
ENSG00000164040 ENST00000296425 39.928±0.00 12.072±0.00 1.032±0.00 5.874±3.27 21.802±20.43 12.069±9.67 6.548±5.54 12.202±7.86 7.908±5.81 7.483±6.47 6.478±0.00 10.705±8.57 25.881±7.06 9.885±5.23
ENST00000394276 N/A N/A 1.100±0.00 N/A 1.507±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.412±0.00 89.609±0.00 31.788±0.00
ENST00000503872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.547±0.00 N/A 15.314±0.00
ENST00000509070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512483 38.071±0.00 7.663±0.00 4.095±0.00 7.711±0.00 17.244±13.32 17.127±12.47 6.798±4.72 15.039±4.32 9.786±3.53 15.767±0.00 9.293±0.00 5.807±2.59 20.065±0.54 13.128±0.00
ENST00000520121 N/A N/A N/A N/A N/A N/A N/A N/A 0.887±0.00 N/A N/A N/A N/A N/A
ENST00000613358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241651 ENST00000475247 0.080±0.00 0.139±0.00 N/A 0.100±0.00 0.127±0.01 0.052±0.00 0.050±0.00 N/A N/A 0.311±0.21 0.095±0.00 0.300±0.19 N/A 0.025±0.00
ENSG00000248187 ENST00000514265 0.108±0.00 0.020±0.00 N/A N/A 0.149±0.00 0.249±0.00 0.080±0.00 0.519±0.00 0.017±0.00 0.051±0.00 N/A 0.081±0.07 0.298±0.19 0.029±0.00
ENSG00000248394 ENST00000511041 0.032±0.00 0.035±0.00 N/A 0.043±0.00 0.507±0.00 0.304±0.27 0.041±0.00 0.296±0.18 N/A 0.037±0.00 N/A 0.990±0.56 0.713±0.00 1.397±1.30
ENSG00000248802 ENST00000487657 0.167±0.00 0.532±0.00 N/A 0.504±0.00 0.259±0.00 0.271±0.00 0.132±0.00 0.183±0.00 0.125±0.00 0.271±0.14 0.062±0.00 N/A 0.130±0.00 0.180±0.05
ENST00000509360 N/A N/A N/A N/A N/A N/A N/A 1.061±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000251432 ENST00000504984 0.224±0.00 N/A N/A 0.482±0.00 0.826±0.00 N/A 0.157±0.00 N/A 0.022±0.00 N/A N/A N/A 0.227±0.14 N/A
ENST00000505133 N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A N/A N/A N/A 1.635±0.00 N/A N/A
ENST00000509834 N/A N/A 0.550±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.269±0.00
ENST00000511497 0.036±0.00 0.086±0.00 0.089±0.00 N/A 0.078±0.00 0.125±0.05 0.101±0.04 0.186±0.00 0.009±0.00 N/A N/A 0.144±0.02 0.192±0.00 0.610±0.00
ENST00000513851 N/A N/A N/A 0.262±0.00 0.701±0.00 N/A 0.095±0.00 N/A 0.092±0.00 5.664±0.00 N/A N/A N/A N/A
ENSG00000273077 ENST00000608228 N/A 0.058±0.00 N/A N/A 0.059±0.00 0.439±0.00 0.281±0.00 0.294±0.00 N/A N/A N/A 0.174±0.00 N/A 0.214±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025762 ENSMUST00000026862 0.138±0.00 0.334±0.27 1.635±0.41 0.092±0.00 0.265±0.02 0.335±0.02 0.356±0.12 N/A 0.508±0.16 0.372±0.00 0.367±0.05 0.483±0.30 0.114±0.08 2.847±0.20
ENSMUST00000065411 0.217±0.08 0.195±0.11 0.452±0.09 0.125±0.00 0.126±0.03 0.297±0.14 0.132±0.02 0.155±0.02 0.168±0.08 0.074±0.02 0.084±0.00 0.153±0.05 0.040±0.03 0.475±0.13
ENSMUST00000099121 0.553±0.24 0.449±0.24 0.773±0.12 N/A 0.520±0.24 0.790±0.16 0.245±0.01 0.847±0.20 0.278±0.08 0.161±0.00 0.370±0.06 0.765±0.20 0.116±0.05 9.331±2.03
ENSMUSG00000037814 ENSMUST00000048490 4.721±1.35 1.790±0.35 5.226±0.35 1.496±0.82 5.494±2.67 4.076±1.15 7.844±0.88 5.874±1.02 9.718±3.07 2.505±0.98 14.624±2.25 3.394±1.48 3.940±1.44 79.416±37.51
ENSMUSG00000037818 ENSMUST00000060415 N/A N/A N/A N/A 2.661±0.72 1.738±0.00 N/A N/A N/A 1.647±0.00 N/A 0.648±0.17 N/A N/A
ENSMUST00000108077 N/A N/A N/A N/A N/A 0.427±0.00 N/A N/A N/A N/A 0.520±0.12 N/A 0.500±0.00 N/A
ENSMUST00000108078 0.539±0.09 0.243±0.00 N/A 0.505±0.00 0.702±0.02 0.636±0.00 4.363±0.80 N/A 1.362±0.49 0.423±0.00 0.902±0.27 0.629±0.40 1.345±0.67 2.190±0.61
ENSMUST00000159057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.426±0.00 N/A
ENSMUST00000159227 N/A N/A 0.442±0.00 N/A 0.746±0.14 0.590±0.04 N/A N/A N/A N/A 0.201±0.00 0.360±0.08 N/A 0.574±0.13
ENSMUST00000159274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.099±0.39 N/A N/A
ENSMUST00000159774 0.205±0.00 0.443±0.15 1.130±0.07 2.879±0.12 N/A 0.569±0.23 N/A 1.015±0.00 1.129±0.40 0.547±0.00 0.239±0.00 0.662±0.25 N/A 0.845±0.00
ENSMUST00000161111 N/A N/A N/A 0.631±0.00 N/A 0.589±0.00 N/A N/A N/A 0.511±0.00 N/A N/A N/A 0.624±0.09
ENSMUSG00000049940 ENSMUST00000058578 21.424±1.65 39.205±6.35 17.063±0.28 9.866±2.87 25.682±12.08 17.925±1.96 7.119±0.83 15.837±3.25 14.525±5.42 19.694±5.00 6.679±0.92 34.196±12.73 17.007±3.73 17.269±10.75
ENSMUST00000124636 N/A N/A N/A 25.229±0.00 N/A N/A N/A N/A N/A N/A N/A 36.354±0.00 36.807±3.33 68.990±0.00
ENSMUSG00000064927 ENSMUST00000082993 N/A N/A N/A N/A N/A N/A N/A N/A 1.556±0.00 N/A N/A 2.861±0.66 4.074±0.00 N/A
ENSMUSG00000074619 ENSMUST00000099123 0.063±0.05 0.056±0.00 0.076±0.00 0.094±0.02 0.105±0.09 0.053±0.00 0.083±0.03 0.055±0.05 0.033±0.03 0.045±0.02 0.077±0.02 0.067±0.05 0.037±0.02 71.765±31.45
ENSMUSG00000097583 ENSMUST00000181813 0.659±0.17 0.624±0.39 0.475±0.00 2.091±0.00 0.597±0.41 0.476±0.23 0.458±0.09 0.498±0.25 0.299±0.10 0.336±0.22 0.174±0.10 0.444±0.25 0.390±0.16 0.765±0.26

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