C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008YJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm690 VISTA 9606 15:60786388-61389185
GeneTranscriptPositionBiotype
ENSG00000259481 (RP11-39M21.1)
 ENST00000560876 (RP11-39M21.1-001) 61181249-61195938 antisense
ENSG00000259575 (RP11-39M21.2)
 ENST00000558572 (RP11-39M21.2-001) 61211913-61214231 antisense
ENSG00000259616 (RP11-507B12.2)
 ENST00000559783 (RP11-507B12.2-001) 61298791-61635449 lincRNA
ENSG00000273792 (RP11-554D20.2)
 ENST00000616822 (RP11-554D20.2-001) 60847757-60849068 sense_intronic
ENSG00000276473 (CTD-2026J24.1)
 ENST00000616204 (CTD-2026J24.1-001) 61239906-61240331 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008YJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm690 VISTA 10090 9:68494558-69097064
GeneTranscriptPositionBiotype
ENSMUSG00000032238 (Rora)
RAR-related orphan receptor alpha 		ENSMUST00000034766 (Rora-001) 68653786-69388246 protein_coding
ENSMUST00000113624 (Rora-002) 69289682-69379809 protein_coding
ENSMUST00000132355 (Rora-005) 69195541-69250834 processed_transcript
ENSMUST00000140351 (Rora-003) 68653786-68664967 processed_transcript
ENSMUST00000143507 (Rora-004) 68655303-68664180 processed_transcript
ENSMUST00000174296 (Rora-006) 68653891-69364494 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YJ_0001ENSG00000259481ENST00000560876ENSG00000259575ENST00000558572ENSG00000259616ENST00000559783ENSG00000273792ENST00000616822ENSG00000276473ENST00000616204CIL_0008YJ_0002ENSMUSG00000032238ENSMUST00000034766ENSMUST00000113624ENSMUST00000132355ENSMUST00000140351ENSMUST00000143507ENSMUST00000174296
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YJ_0001ENSG00000259481ENST00000560876ENSG00000259575ENST00000558572ENSG00000259616ENST00000559783ENSG00000273792ENST00000616822ENSG00000276473ENST00000616204CIL_0008YJ_0002ENSMUSG00000032238ENSMUST00000034766ENSMUST00000113624ENSMUST00000140351ENSMUST00000174296
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000259481 ENST00000560876 N/A N/A N/A 0.059±0.00 0.148±0.00 N/A 0.132±0.00 N/A N/A N/A N/A N/A N/A 0.564±0.15
ENSG00000259575 ENST00000558572 N/A N/A N/A N/A N/A N/A 0.023±0.00 0.408±0.10 0.109±0.00 N/A N/A 0.093±0.05 N/A 0.191±0.12
ENSG00000259616 ENST00000559783 0.471±0.00 0.076±0.00 N/A 0.173±0.00 0.061±0.00 0.034±0.00 0.017±0.00 0.049±0.00 0.027±0.00 0.079±0.00 0.054±0.00 0.042±0.00 0.058±0.01 0.024±0.00
ENSG00000273792 ENST00000616822 0.129±0.00 0.141±0.00 1.451±0.00 0.342±0.18 0.472±0.38 0.526±0.00 0.255±0.14 0.261±0.24 0.443±0.38 0.581±0.49 0.785±0.00 0.392±0.17 N/A 0.079±0.05
ENSG00000276473 ENST00000616204 N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A N/A N/A N/A N/A 0.057±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032238 ENSMUST00000034766 2.727±0.29 7.506±1.80 0.909±0.00 2.260±1.43 2.374±0.61 1.221±0.21 1.324±0.51 2.534±1.01 3.074±1.57 4.127±0.45 0.991±0.09 2.320±0.42 1.146±0.73 0.759±0.21
ENSMUST00000113624 2.742±0.31 9.689±4.65 N/A 11.281±0.00 2.487±0.85 1.066±0.42 1.844±0.50 4.272±0.99 4.138±1.01 5.252±0.51 N/A 2.968±1.71 2.089±1.43 12.611±0.80
ENSMUST00000132355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140351 N/A N/A N/A N/A N/A N/A N/A N/A 0.623±0.13 N/A N/A N/A N/A N/A
ENSMUST00000143507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174296 N/A 6.672±0.00 N/A N/A 3.276±0.00 1.251±0.00 N/A N/A N/A N/A N/A 6.373±1.16 N/A N/A

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