C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00098D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs23 VISTA 9606 16:55090504-55691826
GeneTranscriptPositionBiotype
ENSG00000087245 (MMP2)
matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) 		ENST00000219070 (MMP2-001) 55478971-55506691 protein_coding
ENST00000437642 (MMP2-003) 55481557-55505759 protein_coding
ENST00000543485 (MMP2-002) 55480533-55505525 protein_coding
ENST00000564864 (MMP2-004) 55479998-55485776 protein_coding
ENST00000566564 (MMP2-005) 55505375-55506239 nonsense_mediated_decay
ENST00000568715 (MMP2-007) 55478830-55485352 protein_coding
ENST00000570283 (MMP2-006) 55488662-55502889 protein_coding
ENST00000570308 (MMP2-008) 55389700-55506237 protein_coding
ENSG00000087253 (LPCAT2)
lysophosphatidylcholine acyltransferase 2 		ENST00000262134 (LPCAT2-001) 55508998-55586670 protein_coding
ENST00000562299 (LPCAT2-008) 55579018-55583237 retained_intron
ENST00000563095 (LPCAT2-005) 55545485-55574729 retained_intron
ENST00000564084 (LPCAT2-004) 55528493-55542028 protein_coding
ENST00000565056 (LPCAT2-007) 55556923-55583012 processed_transcript
ENST00000566375 (LPCAT2-006) 55549306-55551333 retained_intron
ENST00000566911 (LPCAT2-003) 55509072-55526058 retained_intron
ENST00000566915 (LPCAT2-002) 55532039-55586666 retained_intron
ENST00000615823 (LPCAT2-201) 55532039-55586662 protein_coding
ENSG00000103546 (SLC6A2)
solute carrier family 6 (neurotransmitter transporter), member 2 		ENST00000219833 (SLC6A2-201) 55656644-55706192 protein_coding
ENST00000379906 (SLC6A2-001) 55656440-55703788 protein_coding
ENST00000414754 (SLC6A2-003) 55656110-55703750 protein_coding
ENST00000561820 (SLC6A2-007) 55656618-55705648 protein_coding
ENST00000566163 (SLC6A2-006) 55656655-55702346 protein_coding
ENST00000567238 (SLC6A2-005) 55671671-55703791 protein_coding
ENST00000568529 (SLC6A2-009) 55656086-55694113 protein_coding
ENST00000568655 (SLC6A2-008) 55656254-55672131 protein_coding
ENST00000568943 (SLC6A2-004) 55655604-55702346 protein_coding
ENST00000574918 (SLC6A2-010) 55700274-55705853 protein_coding
ENSG00000159387 (IRX6)
iroquois homeobox 6 		ENST00000290552 (IRX6-001) 55323760-55330760 protein_coding
ENST00000558315 (IRX6-002) 55325800-55327796 processed_transcript
ENSG00000239555 (RN7SL841P)
RNA, 7SL, cytoplasmic 841, pseudogene 		ENST00000470547 (RN7SL841P-201) 55291379-55291675 misc_RNA
ENSG00000256812 (CAPNS2)
calpain, small subunit 2 		ENST00000457326 (CAPNS2-001) 55566672-55567687 protein_coding
ENSG00000259283 (RP11-26L20.3)
 ENST00000558730 (RP11-26L20.3-001) 55259969-55333588 antisense
ENSG00000260135 (RP11-212I21.2)
 ENST00000565307 (RP11-212I21.2-002) 55429135-55444759 lincRNA
ENST00000569037 (RP11-212I21.2-001) 55427558-55462297 lincRNA
ENST00000620495 (RP11-212I21.2-003) 55426797-55427951 lincRNA
ENSG00000261997 (RP11-212I21.4)
 ENST00000576365 (RP11-212I21.4-001) 55538200-55542027 lincRNA
ENSG00000263207 (RP11-26L20.4)
 ENST00000573934 (RP11-26L20.4-001) 55332355-55332967 lincRNA
ENSG00000274508 (RP11-212I21.5)
 ENST00000611626 (RP11-212I21.5-001) 55425574-55426130 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_00098D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs23 VISTA 10090 8:92442867-93044200
GeneTranscriptPositionBiotype
ENSMUSG00000031738 (Irx6)
Iroquois related homeobox 6 (Drosophila) 		ENSMUST00000034185 (Irx6-001) 92674288-92680956 protein_coding
ENSMUST00000167261 (Irx6-002) 92674826-92680956 protein_coding
ENSMUSG00000031740 (Mmp2)
matrix metallopeptidase 2 		ENSMUST00000034187 (Mmp2-201) 92827328-92853417 protein_coding
ENSMUSG00000033192 (Lpcat2)
lysophosphatidylcholine acyltransferase 2 		ENSMUST00000046290 (Lpcat2-001) 92855350-92919279 protein_coding
ENSMUST00000130471 (Lpcat2-002) 92855480-92870058 processed_transcript
ENSMUST00000151106 (Lpcat2-003) 92905918-92918068 processed_transcript
ENSMUSG00000055368 (Slc6a2)
solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 		ENSMUST00000072939 (Slc6a2-201) 92961047-93001667 protein_coding
ENSMUST00000165470 (Slc6a2-202) 92960079-92998924 protein_coding
ENSMUSG00000071047 (Ces1a)
carboxylesterase 1A 		ENSMUST00000095211 (Ces1a-201) 93020214-93048192 protein_coding
ENSMUSG00000078144 (Capns2)
calpain, small subunit 2 		ENSMUST00000104947 (Capns2-001) 92901407-92902407 protein_coding
ENSMUSG00000078967 (Gm3272)
predicted pseudogene 3272 		ENSMUST00000181181 (Gm3272-001) 92715747-92716975 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087245 ENST00000219070 160.351±0.00 4.443±0.00 1.036±0.00 0.197±0.09 20.144±7.78 17.419±12.95 5.071±2.95 1.955±1.59 6.240±5.31 15.342±10.23 3.816±2.06 27.732±21.21 36.056±15.06 13.388±8.95
ENST00000437642 N/A N/A 0.848±0.00 0.150±0.00 N/A N/A 1.994±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000543485 194.921±0.00 9.945±0.00 0.930±0.00 0.927±0.00 27.068±6.17 7.315±0.00 2.005±0.00 4.355±3.42 9.909±0.00 5.236±0.00 1.374±0.00 23.294±11.82 89.904±0.00 N/A
ENST00000564864 N/A N/A 3.199±0.00 N/A 25.877±0.00 N/A N/A 1.581±0.00 20.523±0.00 12.810±0.00 N/A 12.732±0.00 N/A N/A
ENST00000566564 N/A N/A N/A 1.338±0.00 N/A N/A N/A N/A 4.069±0.00 N/A N/A N/A N/A N/A
ENST00000568715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570283 N/A N/A N/A N/A N/A N/A N/A N/A 18.349±0.00 N/A N/A 38.998±0.00 114.880±0.00 23.417±0.00
ENST00000570308 N/A N/A N/A N/A 11.842±0.00 N/A N/A N/A N/A N/A 2.076±0.00 N/A N/A N/A
ENSG00000087253 ENST00000262134 5.580±0.00 1.973±0.00 1.080±0.00 2.624±1.13 2.082±0.05 2.664±2.44 0.530±0.20 4.223±0.00 0.488±0.15 1.281±0.89 0.880±0.00 2.175±1.98 2.479±0.64 2.635±2.15
ENST00000562299 N/A N/A N/A N/A N/A N/A N/A 0.754±0.00 N/A N/A N/A N/A N/A N/A
ENST00000563095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.693±0.00 N/A N/A
ENST00000564084 N/A N/A N/A N/A N/A N/A N/A 1.019±0.00 N/A N/A N/A 0.641±0.00 N/A 0.976±0.00
ENST00000565056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566915 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.434±0.00 N/A N/A N/A N/A
ENST00000615823 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.442±0.00 N/A N/A N/A N/A
ENSG00000103546 ENST00000219833 N/A N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A 2.985±0.00 N/A
ENST00000379906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.559±1.75 0.671±0.00
ENST00000414754 N/A N/A 0.067±0.00 N/A N/A N/A 0.010±0.00 N/A 0.079±0.00 N/A N/A 0.016±0.00 N/A N/A
ENST00000561820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566163 N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A N/A
ENST00000567238 N/A 0.019±0.00 0.051±0.00 0.024±0.00 0.348±0.00 N/A N/A N/A 0.063±0.00 N/A N/A 0.092±0.00 N/A 1.772±0.38
ENST00000568529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568655 N/A N/A N/A N/A N/A 0.262±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574918 0.280±0.00 0.174±0.00 N/A N/A 0.261±0.00 0.066±0.00 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000159387 ENST00000290552 4.461±0.00 0.081±0.00 0.183±0.00 0.013±0.00 8.555±8.29 0.413±0.38 1.912±1.87 0.966±0.00 0.025±0.00 0.269±0.26 1.161±0.00 0.080±0.05 0.070±0.02 0.052±0.00
ENST00000558315 N/A N/A 0.233±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A
ENSG00000239555 ENST00000470547 N/A N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000256812 ENST00000457326 0.041±0.00 0.057±0.00 0.112±0.00 0.247±0.16 0.066±0.02 0.381±0.30 0.039±0.00 0.231±0.00 1.819±0.00 0.230±0.16 N/A 1.838±2.18 0.181±0.11 0.084±0.06
ENSG00000259283 ENST00000558730 N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000260135 ENST00000565307 N/A N/A N/A N/A 0.214±0.00 N/A 0.053±0.00 N/A N/A N/A N/A 0.063±0.00 0.097±0.00 N/A
ENST00000569037 N/A N/A N/A N/A 0.058±0.00 N/A 0.026±0.00 N/A N/A 0.230±0.00 N/A 0.087±0.00 N/A N/A
ENST00000620495 0.138±0.00 0.058±0.00 N/A 0.065±0.00 0.278±0.00 0.055±0.00 0.025±0.00 0.029±0.00 N/A 0.206±0.00 N/A 0.083±0.00 0.077±0.00 N/A
ENSG00000261997 ENST00000576365 N/A N/A N/A N/A 1.034±0.00 0.356±0.00 N/A N/A N/A 0.512±0.00 N/A 0.255±0.00 N/A 0.138±0.00
ENSG00000263207 ENST00000573934 N/A N/A N/A N/A 0.112±0.00 0.232±0.00 0.033±0.00 0.035±0.00 N/A N/A N/A N/A N/A 0.065±0.00
ENSG00000274508 ENST00000611626 N/A 0.267±0.00 N/A N/A N/A N/A 0.098±0.07 N/A N/A N/A N/A N/A 0.114±0.01 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031738 ENSMUST00000034185 N/A N/A N/A 0.575±0.36 0.031±0.02 0.041±0.01 N/A N/A N/A N/A N/A N/A 0.010±0.00 0.046±0.00
ENSMUST00000167261 N/A N/A N/A 0.194±0.04 N/A 0.058±0.03 0.013±0.00 N/A 0.014±0.01 0.017±0.01 N/A N/A 0.002±0.00 0.067±0.01
ENSMUSG00000031740 ENSMUST00000034187 135.853±68.65 11.109±0.75 143.946±12.57 6.292±3.64 189.682±46.05 59.395±7.64 31.927±2.44 8.291±0.98 3.404±1.71 57.402±6.83 9.793±1.72 86.906±23.63 8.473±5.18 1.898±0.71
ENSMUSG00000033192 ENSMUST00000046290 2.393±2.03 2.652±1.02 1.450±0.44 1.034±0.40 2.339±0.91 4.076±2.24 0.354±0.10 0.617±0.13 0.953±0.66 2.477±0.68 0.108±0.05 5.513±2.23 0.532±0.18 0.111±0.04
ENSMUST00000130471 N/A N/A N/A N/A N/A N/A N/A 0.430±0.00 N/A N/A 0.117±0.07 1.676±0.00 N/A N/A
ENSMUST00000151106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055368 ENSMUST00000072939 7.740±7.57 1.285±0.00 0.389±0.09 0.252±0.00 0.085±0.02 0.026±0.00 N/A 0.998±0.00 0.004±0.00 8.471±1.98 0.064±0.01 0.685±0.46 10.364±8.09 0.018±0.01
ENSMUST00000165470 N/A N/A N/A N/A 0.178±0.03 0.025±0.01 N/A 0.239±0.09 0.003±0.00 2.025±0.00 N/A 0.349±0.15 18.202±6.51 0.025±0.01
ENSMUSG00000071047 ENSMUST00000095211 N/A N/A 0.004±0.00 0.004±0.00 0.114±0.02 N/A N/A 0.054±0.00 0.075±0.05 0.039±0.01 0.028±0.00 0.046±0.00 0.807±0.51 0.787±0.40
ENSMUSG00000078144 ENSMUST00000104947 0.169±0.18 0.251±0.00 0.585±0.14 0.582±0.32 1.045±0.87 0.196±0.12 0.071±0.00 0.073±0.05 0.066±0.04 3.682±2.57 0.214±0.18 0.342±0.22 0.089±0.02 1.018±0.23
ENSMUSG00000078967 ENSMUST00000181181 0.326±0.04 0.694±0.15 0.213±0.05 1.534±1.43 0.369±0.17 0.265±0.14 0.430±0.13 0.735±0.15 0.428±0.36 0.432±0.06 0.998±0.23 0.430±0.23 0.273±0.18 0.426±0.03

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