C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009AN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1358 VISTA 9606 6:162555798-163158898
GeneTranscriptPositionBiotype
ENSG00000112530 (PACRG)
PARK2 co-regulated 		ENST00000337019 (PACRG-003) 162727132-163315491 protein_coding
ENST00000366888 (PACRG-002) 162727961-163315311 protein_coding
ENST00000366889 (PACRG-001) 162727132-163315492 protein_coding
ENST00000534958 (PACRG-005) 162814245-163179401 protein_coding
ENST00000541974 (PACRG-004) 162814152-163315142 nonsense_mediated_decay
ENST00000542669 (PACRG-009) 162727977-162892021 processed_transcript
ENST00000542936 (PACRG-007) 163062286-163245168 protein_coding
ENST00000544266 (PACRG-008) 162728000-162814335 retained_intron
ENST00000545186 (PACRG-006) 163016209-163095429 processed_transcript
ENST00000611387 (PACRG-201) 163312778-163314987 protein_coding
ENST00000621363 (PACRG-202) 163060843-163090305 protein_coding
ENSG00000185345 (PARK2)
parkin RBR E3 ubiquitin protein ligase 		ENST00000338468 (PARK2-003) 161350099-162727668 protein_coding
ENST00000366892 (PARK2-002) 161545112-162727764 protein_coding
ENST00000366894 (PARK2-001) 161350099-162727668 protein_coding
ENST00000366896 (PARK2-006) 161348639-162727771 protein_coding
ENST00000366897 (PARK2-005) 161348639-162727771 protein_coding
ENST00000366898 (PARK2-004) 161347420-162727771 protein_coding
ENST00000479615 (PARK2-007) 161350099-162727668 nonsense_mediated_decay
ENST00000610470 (PARK2-201) 161350099-161569420 protein_coding
ENST00000612485 (PARK2-202) 161548754-161569420 protein_coding
ENST00000612540 (PARK2-203) 162262526-162275386 protein_coding
ENST00000615065 (PARK2-204) 162262461-162262768 protein_coding
ENSG00000217557 (RP11-157L10.1)
 ENST00000404178 (RP11-157L10.1-001) 162957258-162957548 processed_pseudogene
ENSG00000225437 (RP1-257A15.1)
 ENST00000418665 (RP1-257A15.1-003) 163042980-163054161 antisense
ENST00000433489 (RP1-257A15.1-002) 163042979-163051414 antisense
ENST00000440924 (RP1-257A15.1-001) 163042557-163046685 antisense
ENSG00000227913 (KRT8P44)
keratin 8 pseudogene 44 		ENST00000441609 (KRT8P44-001) 162568379-162569728 processed_pseudogene
CIL_0009AN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1358 VISTA 10090 17:10443926-11046179
GeneTranscriptPositionBiotype
ENSMUSG00000023826 (Park2)
Parkinson disease (autosomal recessive, juvenile) 2, parkin 		ENSMUST00000066658 (Park2-003) 10840384-11557234 retained_intron
ENSMUST00000097413 (Park2-002) 10840391-10945412 processed_transcript
ENSMUST00000168593 (Park2-201) 11067125-11493173 protein_coding
ENSMUST00000179624 (Park2-202) 11838602-11867561 protein_coding
ENSMUST00000186167 (Park2-004) 10840384-11557234 retained_intron
ENSMUST00000186406 (Park2-007) 11303647-11610945 protein_coding
ENSMUST00000190849 (Park2-005) 11845210-11867561 processed_transcript
ENSMUST00000190894 (Park2-006) 12029916-12063358 processed_transcript
ENSMUST00000191124 (Park2-001) 10840384-12063361 protein_coding
ENSMUSG00000037196 (Pacrg)
PARK2 co-regulated 		ENSMUST00000041463 (Pacrg-001) 10403012-10840311 protein_coding
ENSMUST00000160599 (Pacrg-002) 10576478-10631067 processed_transcript
ENSMUSG00000089633 (A230009B12Rik)
RIKEN cDNA A230009B12 gene 		ENSMUST00000159422 (A230009B12Rik-003) 10456222-10473759 antisense
ENSMUST00000159602 (A230009B12Rik-001) 10456296-10493055 antisense
ENSMUST00000160738 (A230009B12Rik-004) 10464837-10473758 antisense
ENSMUST00000160763 (A230009B12Rik-002) 10456216-10474123 antisense
ENSMUSG00000089907 (Gm16169)
predicted gene 16169 		ENSMUST00000159155 (Gm16169-002) 10807839-10816582 retained_intron
ENSMUST00000162432 (Gm16169-001) 10807834-10826625 antisense
ENSMUSG00000089941 (Gm16168)
predicted gene 16168 		ENSMUST00000161091 (Gm16168-002) 10496453-10553169 antisense
ENSMUST00000161274 (Gm16168-001) 10496446-10569396 antisense
ENSMUSG00000099797 (RP23-317H14.1)
predicted gene 3145 		ENSMUST00000188584 (RP23-317H14.1-001) 10898995-10899214 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009AN_0001ENSG00000112530ENST00000337019ENST00000366888ENST00000366889ENST00000534958ENST00000541974ENST00000542669ENST00000542936ENST00000544266ENST00000545186ENST00000611387ENST00000621363ENSG00000185345ENST00000338468ENST00000366892ENST00000366894ENST00000366896ENST00000366897ENST00000366898ENST00000479615ENST00000610470ENST00000612485ENST00000612540ENST00000615065ENSG00000217557ENST00000404178ENSG00000225437ENST00000418665ENST00000433489ENST00000440924ENSG00000227913ENST00000441609CIL_0009AN_0002ENSMUSG00000023826ENSMUST00000066658ENSMUST00000097413ENSMUST00000168593ENSMUST00000179624ENSMUST00000186167ENSMUST00000186406ENSMUST00000190849ENSMUST00000190894ENSMUST00000191124ENSMUSG00000037196ENSMUST00000041463ENSMUST00000160599ENSMUSG00000089633ENSMUST00000159422ENSMUST00000159602ENSMUST00000160738ENSMUST00000160763ENSMUSG00000089907ENSMUST00000159155ENSMUST00000162432ENSMUSG00000089941ENSMUST00000161091ENSMUST00000161274ENSMUSG00000099797ENSMUST00000188584
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009AN_0001ENSG00000112530ENST00000337019ENST00000366888ENST00000366889ENST00000534958ENST00000541974ENST00000542669ENST00000544266ENST00000611387ENST00000621363ENSG00000185345ENST00000338468ENST00000366892ENST00000366896ENST00000366897ENST00000366898ENST00000615065ENSG00000217557ENST00000404178ENSG00000225437ENST00000418665ENST00000440924ENSG00000227913ENST00000441609CIL_0009AN_0002ENSMUSG00000023826ENSMUST00000066658ENSMUST00000097413ENSMUST00000168593ENSMUST00000186167ENSMUST00000190894ENSMUST00000191124ENSMUSG00000037196ENSMUST00000041463ENSMUST00000160599ENSMUSG00000089633ENSMUST00000159422ENSMUST00000159602ENSMUST00000160738ENSMUST00000160763ENSMUSG00000089907ENSMUST00000159155ENSMUST00000162432ENSMUSG00000089941ENSMUST00000161091ENSMUST00000161274ENSMUSG00000099797ENSMUST00000188584
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112530 ENST00000337019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.877±0.00 N/A N/A
ENST00000366888 N/A 0.155±0.00 N/A 3.366±0.00 0.296±0.00 N/A N/A 0.892±0.00 0.165±0.00 7.394±0.00 N/A 3.618±3.14 N/A 18.338±4.22
ENST00000366889 N/A N/A N/A 1.219±0.00 0.185±0.00 N/A N/A 0.633±0.00 0.089±0.00 0.339±0.00 0.143±0.00 0.217±0.15 N/A N/A
ENST00000534958 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541974 N/A N/A N/A N/A N/A 0.235±0.00 N/A 0.286±0.00 0.134±0.00 N/A N/A N/A N/A N/A
ENST00000542669 0.153±0.00 N/A N/A N/A 0.185±0.00 N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A
ENST00000542936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544266 N/A N/A N/A 2.135±0.00 N/A N/A N/A N/A N/A 2.776±0.00 N/A N/A N/A N/A
ENST00000545186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611387 0.300±0.00 0.649±0.00 N/A N/A N/A N/A N/A 3.067±0.00 N/A N/A N/A N/A 0.476±0.00 N/A
ENST00000621363 N/A N/A N/A N/A N/A N/A N/A 2.761±0.00 0.681±0.00 N/A 2.356±0.00 N/A 0.183±0.02 N/A
ENSG00000185345 ENST00000338468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 0.312±0.00 N/A
ENST00000366892 N/A N/A N/A N/A N/A 1.030±0.00 N/A N/A 1.234±0.00 0.716±0.00 N/A N/A N/A 1.097±0.00
ENST00000366894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000366896 N/A N/A 18.674±0.00 5.366±0.00 N/A N/A N/A N/A 1.720±0.00 N/A 7.981±0.00 N/A N/A N/A
ENST00000366897 N/A N/A N/A 3.221±0.00 0.604±0.00 0.787±0.00 2.073±0.00 0.915±0.00 1.890±0.00 1.213±0.00 N/A 0.952±0.00 0.083±0.00 N/A
ENST00000366898 0.822±0.00 N/A N/A 1.841±0.00 1.121±0.69 0.353±0.00 2.714±1.26 2.002±0.00 0.309±0.00 0.176±0.00 N/A 0.729±0.09 0.086±0.00 2.015±0.00
ENST00000479615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.655±0.00 N/A
ENSG00000217557 ENST00000404178 0.053±0.00 0.054±0.00 N/A 0.057±0.00 N/A N/A N/A N/A N/A 0.099±0.00 0.049±0.00 N/A N/A 0.140±0.00
ENSG00000225437 ENST00000418665 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A 0.392±0.00
ENST00000433489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440924 N/A N/A N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000227913 ENST00000441609 N/A 0.028±0.00 0.030±0.00 0.031±0.00 N/A N/A 0.062±0.00 N/A 0.013±0.00 0.059±0.00 N/A N/A N/A 0.037±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023826 ENSMUST00000066658 N/A N/A N/A 1.624±0.00 N/A 0.365±0.07 N/A N/A 3.975±1.34 N/A N/A 1.084±0.00 0.298±0.16 N/A
ENSMUST00000097413 N/A N/A N/A N/A N/A N/A 0.274±0.07 N/A 0.021±0.01 N/A 0.192±0.00 N/A 0.031±0.00 N/A
ENSMUST00000168593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 3.807±0.00
ENSMUST00000179624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186167 0.888±0.15 1.296±0.68 1.865±0.00 1.269±0.00 1.098±0.56 0.752±0.31 1.291±0.34 1.578±0.45 0.610±0.51 1.071±0.17 1.314±0.26 0.764±0.21 0.125±0.03 2.518±0.32
ENSMUST00000186406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190894 N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A 0.031±0.00 N/A N/A 0.485±0.27 0.418±0.42 N/A
ENSMUST00000191124 2.077±0.90 1.485±0.72 1.263±0.01 1.251±0.79 0.970±0.30 0.310±0.13 0.807±0.43 1.780±0.49 0.365±0.33 1.189±0.06 1.318±0.38 1.436±0.63 0.158±0.10 6.147±2.43
ENSMUSG00000037196 ENSMUST00000041463 0.206±0.07 0.594±0.17 0.859±0.20 3.192±0.68 0.289±0.17 0.187±0.10 0.379±0.11 0.670±0.22 0.056±0.03 1.123±0.17 1.190±0.22 1.663±0.72 0.204±0.10 116.808±46.03
ENSMUST00000160599 N/A 0.856±0.00 N/A N/A 0.786±0.00 N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000089633 ENSMUST00000159422 N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A 0.138±0.05 N/A N/A 0.056±0.00
ENSMUST00000159602 0.034±0.02 N/A 0.030±0.00 0.074±0.06 0.044±0.02 N/A 0.016±0.00 0.019±0.00 N/A N/A 0.103±0.05 0.027±0.00 0.016±0.01 0.095±0.07
ENSMUST00000160738 0.092±0.02 N/A 0.025±0.00 0.137±0.11 0.130±0.07 0.119±0.00 0.298±0.06 N/A 0.011±0.00 0.065±0.00 0.163±0.03 0.276±0.00 0.008±0.00 0.127±0.03
ENSMUST00000160763 N/A N/A N/A 0.030±0.00 0.079±0.00 N/A 0.060±0.00 0.052±0.02 N/A N/A 0.099±0.04 N/A N/A N/A
ENSMUSG00000089907 ENSMUST00000159155 N/A N/A 0.008±0.00 0.052±0.02 0.114±0.06 N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00
ENSMUST00000162432 0.029±0.00 N/A 0.004±0.00 0.017±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.03
ENSMUSG00000089941 ENSMUST00000161091 1.037±0.46 0.394±0.25 0.019±0.00 0.045±0.00 0.446±0.25 N/A 0.096±0.05 0.024±0.00 0.022±0.00 0.096±0.05 0.101±0.05 0.134±0.07 0.021±0.01 0.346±0.14
ENSMUST00000161274 3.043±1.30 0.681±0.35 0.198±0.14 0.147±0.08 2.023±0.99 N/A 0.215±0.01 0.379±0.13 N/A 0.406±0.09 0.144±0.02 0.521±0.21 N/A 0.457±0.19
ENSMUSG00000099797 ENSMUST00000188584 1.392±0.00 N/A 0.404±0.06 0.410±0.22 2.077±0.51 1.444±0.00 1.007±0.32 1.543±0.90 0.788±0.30 1.066±0.00 N/A 5.689±0.00 0.112±0.00 0.617±0.00

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