C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009BB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs333 VISTA 9606 11:7996158-8596683
GeneTranscriptPositionBiotype
ENSG00000166407 (LMO1)
LIM domain only 1 (rhombotin 1) 		ENST00000335790 (LMO1-001) 8224304-8263858 protein_coding
ENST00000428101 (LMO1-003) 8224314-8268716 protein_coding
ENST00000524379 (LMO1-002) 8224449-8263388 retained_intron
ENST00000534484 (LMO1-004) 8224479-8263858 protein_coding
ENSG00000175390 (EIF3F)
eukaryotic translation initiation factor 3, subunit F 		ENST00000309828 (EIF3F-201) 7987320-7996169 protein_coding
ENST00000528653 (EIF3F-006) 7987356-7992993 retained_intron
ENST00000528763 (EIF3F-008) 7994698-7996018 retained_intron
ENST00000530219 (EIF3F-005) 7992127-7996169 retained_intron
ENST00000531329 (EIF3F-004) 7987337-7996075 nonsense_mediated_decay
ENST00000531572 (EIF3F-009) 7995014-7995633 protein_coding
ENST00000532882 (EIF3F-007) 7991822-7992998 retained_intron
ENST00000533626 (EIF3F-001) 7970251-8001862 protein_coding
ENSG00000246820 (RP11-379P15.1)
 ENST00000499752 (RP11-379P15.1-001) 8169167-8178903 lincRNA
ENSG00000248332 (TUB-AS1)
TUB antisense RNA 1 		ENST00000506601 (TUB-AS1-001) 8060038-8069373 sense_intronic
ENST00000530466 (TUB-AS1-002) 8060038-8067940 sense_intronic
ENSG00000255420 (CASC23)
cancer susceptibility candidate 23 (non-protein coding) 		ENST00000534076 (CASC23-001) 8011278-8016489 antisense
ENSG00000279391 (RP11-236J17.7)
 ENST00000623018 (RP11-236J17.7-001) 8075573-8077781 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0009BB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs333 VISTA 10090 7:108902812-109503341
GeneTranscriptPositionBiotype
ENSMUSG00000031026 (Trim66)
tripartite motif-containing 66 		ENSMUST00000033339 (Trim66-003) 109453491-109508134 protein_coding
ENSMUST00000106739 (Trim66-001) 109449006-109493738 protein_coding
ENSMUST00000106741 (Trim66-002) 109453491-109508134 protein_coding
ENSMUST00000137704 (Trim66-004) 109469711-109475134 processed_transcript
ENSMUSG00000031027 (Stk33)
serine/threonine kinase 33 		ENSMUST00000090414 (Stk33-002) 109279223-109439081 protein_coding
ENSMUST00000106745 (Stk33-001) 109279223-109439076 protein_coding
ENSMUST00000121378 (Stk33-005) 109279595-109438998 protein_coding
ENSMUST00000121748 (Stk33-003) 109279223-109438817 protein_coding
ENSMUST00000141210 (Stk33-004) 109279223-109439081 processed_transcript
ENSMUSG00000031028 (Tub)
tubby candidate gene 		ENSMUST00000033341 (Tub-001) 109010825-109034460 protein_coding
ENSMUST00000119474 (Tub-002) 109017542-109030482 protein_coding
ENSMUST00000147943 (Tub-003) 109027223-109029360 retained_intron
ENSMUSG00000031029 (Eif3f)
eukaryotic translation initiation factor 3, subunit F 		ENSMUST00000033342 (Eif3f-001) 108934417-108942951 protein_coding
ENSMUST00000147369 (Eif3f-003) 108940308-108941008 retained_intron
ENSMUST00000153596 (Eif3f-002) 108938395-108940476 retained_intron
ENSMUSG00000036111 (Lmo1)
LIM domain only 1 		ENSMUST00000036992 (Lmo1-201) 109138572-109170308 protein_coding
ENSMUSG00000048330 (Ric3)
resistance to inhibitors of cholinesterase 3 homolog (C. elegans) 		ENSMUST00000055993 (Ric3-001) 109034312-109083331 protein_coding
ENSMUST00000120876 (Ric3-002) 109037948-109083322 protein_coding
ENSMUST00000129629 (Ric3-006) 109080744-109083305 processed_transcript
ENSMUST00000133876 (Ric3-003) 109045382-109083311 retained_intron
ENSMUST00000137385 (Ric3-004) 109057487-109083322 retained_intron
ENSMUST00000147580 (Ric3-005) 109034312-109057824 nonsense_mediated_decay
ENSMUSG00000049709 (Nlrp10)
NLR family, pyrin domain containing 10 		ENSMUST00000055745 (Nlrp10-201) 108921860-108930158 protein_coding
ENSMUSG00000081370 (Gm9105)
predicted gene 9105 		ENSMUST00000120160 (Gm9105-001) 109387478-109388875 processed_pseudogene
ENSMUSG00000085407 (1700095J03Rik)
RIKEN cDNA 1700095J03 gene 		ENSMUST00000143715 (1700095J03Rik-001) 109438618-109444893 processed_transcript
ENSMUSG00000097220 (Gm26599)
predicted gene, 26599 		ENSMUST00000180590 (Gm26599-201) 108950754-108961535 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009BB_0001ENSG00000166407ENST00000335790ENST00000428101ENST00000524379ENST00000534484ENSG00000175390ENST00000309828ENST00000528653ENST00000528763ENST00000530219ENST00000531329ENST00000531572ENST00000532882ENST00000533626ENSG00000246820ENST00000499752ENSG00000248332ENST00000506601ENST00000530466ENSG00000255420ENST00000534076ENSG00000279391ENST00000623018CIL_0009BB_0002ENSMUSG00000031026ENSMUST00000033339ENSMUST00000106739ENSMUST00000106741ENSMUST00000137704ENSMUSG00000031027ENSMUST00000090414ENSMUST00000106745ENSMUST00000121378ENSMUST00000121748ENSMUST00000141210ENSMUSG00000031028ENSMUST00000033341ENSMUST00000119474ENSMUST00000147943ENSMUSG00000031029ENSMUST00000033342ENSMUST00000147369ENSMUST00000153596ENSMUSG00000036111ENSMUST00000036992ENSMUSG00000048330ENSMUST00000055993ENSMUST00000120876ENSMUST00000129629ENSMUST00000133876ENSMUST00000137385ENSMUST00000147580ENSMUSG00000049709ENSMUST00000055745ENSMUSG00000081370ENSMUST00000120160ENSMUSG00000085407ENSMUST00000143715ENSMUSG00000097220ENSMUST00000180590
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009BB_0001ENSG00000166407ENST00000335790ENST00000428101ENST00000524379ENST00000534484ENSG00000175390ENST00000309828ENST00000531329ENST00000533626ENSG00000246820ENST00000499752ENSG00000248332ENST00000506601ENST00000530466ENSG00000255420ENST00000534076ENSG00000279391ENST00000623018CIL_0009BB_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166407 ENST00000335790 N/A N/A 0.120±0.00 0.170±0.10 N/A N/A N/A 0.094±0.00 0.062±0.00 N/A 1.685±0.00 N/A 0.119±0.00 0.170±0.00
ENST00000428101 N/A N/A N/A 0.946±0.00 0.153±0.00 N/A 0.297±0.08 0.178±0.00 N/A N/A 1.106±0.80 N/A 0.216±0.00 0.960±0.06
ENST00000524379 N/A N/A N/A N/A 0.114±0.00 0.506±0.44 N/A N/A N/A N/A N/A N/A 0.201±0.00 0.333±0.00
ENST00000534484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.300±0.00 0.232±0.00
ENSG00000175390 ENST00000309828 76.844±0.00 95.052±0.00 4.830±0.00 20.510±13.39 35.063±26.71 56.378±45.74 18.789±12.32 29.500±18.17 18.771±8.85 40.540±32.78 45.836±31.50 118.289±75.50 157.450±17.14 83.719±1.39
ENST00000528653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.273±0.00 5.523±0.00 N/A N/A
ENST00000531572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533626 1.195±0.00 3.078±0.00 N/A N/A 1.610±0.00 2.744±0.00 N/A 1.884±0.00 1.978±1.56 0.914±0.00 1.334±0.75 2.764±0.00 N/A 2.420±0.45
ENSG00000246820 ENST00000499752 N/A N/A N/A 0.015±0.00 0.054±0.00 N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A 0.184±0.00
ENSG00000248332 ENST00000506601 N/A N/A N/A 0.080±0.06 N/A N/A 0.052±0.01 N/A N/A 0.038±0.00 N/A N/A N/A N/A
ENST00000530466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A 0.041±0.00
ENSG00000255420 ENST00000534076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.098±2.11
ENSG00000279391 ENST00000623018 N/A 0.011±0.00 0.187±0.00 0.018±0.00 N/A N/A 0.045±0.03 N/A N/A 0.020±0.00 N/A 0.005±0.00 N/A 0.252±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031026 ENSMUST00000033339 N/A 0.054±0.00 N/A N/A N/A 0.023±0.00 N/A 0.011±0.00 0.018±0.01 N/A 0.059±0.00 N/A N/A 5.419±2.29
ENSMUST00000106739 0.047±0.02 0.096±0.03 N/A 0.440±0.01 0.139±0.02 0.042±0.02 0.029±0.00 0.012±0.01 0.019±0.01 0.055±0.02 0.021±0.01 0.174±0.06 0.015±0.01 1.685±0.65
ENSMUST00000106741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.417±0.30
ENSMUST00000137704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031027 ENSMUST00000090414 0.136±0.00 N/A N/A 0.681±0.12 N/A N/A 0.048±0.02 N/A N/A 0.414±0.18 0.020±0.00 0.242±0.15 0.299±0.12 51.581±44.18
ENSMUST00000106745 N/A 0.077±0.01 N/A N/A N/A N/A N/A N/A N/A 0.373±0.09 N/A N/A 0.056±0.00 N/A
ENSMUST00000121378 N/A 0.172±0.00 0.131±0.02 1.139±0.63 N/A 0.083±0.00 N/A N/A 0.008±0.00 N/A N/A 0.344±0.15 0.213±0.14 N/A
ENSMUST00000121748 N/A 0.085±0.00 N/A N/A 0.021±0.00 N/A N/A 0.055±0.02 N/A 0.781±0.16 N/A 0.137±0.02 0.095±0.03 32.190±3.77
ENSMUST00000141210 0.079±0.04 N/A 0.067±0.01 0.721±0.59 0.055±0.00 N/A N/A 0.052±0.01 0.017±0.01 0.482±0.09 0.028±0.00 0.246±0.07 0.300±0.00 N/A
ENSMUSG00000031028 ENSMUST00000033341 0.518±0.23 14.313±5.67 N/A 27.410±5.20 0.554±0.24 0.699±0.03 0.116±0.02 0.180±0.09 0.026±0.01 0.243±0.02 0.082±0.00 0.962±0.42 0.100±0.04 2.502±0.76
ENSMUST00000119474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.779±0.19 N/A N/A
ENSMUST00000147943 N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000031029 ENSMUST00000033342 54.566±13.96 52.646±5.14 19.382±5.76 13.167±1.30 63.907±7.66 72.359±6.07 28.842±10.07 48.358±5.02 17.317±5.87 56.748±7.34 14.437±5.25 85.710±36.10 20.395±9.76 29.960±14.12
ENSMUST00000147369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036111 ENSMUST00000036992 4.343±2.82 3.363±0.53 52.668±2.65 22.366±15.55 2.299±0.77 0.348±0.15 1.454±0.92 0.901±0.23 0.110±0.05 0.414±0.05 0.783±0.87 1.761±0.70 0.255±0.21 1.360±0.67
ENSMUSG00000048330 ENSMUST00000055993 0.784±0.44 6.988±0.00 N/A N/A N/A 0.398±0.13 0.109±0.03 0.117±0.02 0.077±0.04 0.447±0.02 0.225±0.07 0.614±0.30 0.136±0.03 1.589±0.16
ENSMUST00000120876 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.02 N/A 0.349±0.00 1.668±0.00 0.142±0.00 N/A
ENSMUST00000129629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133876 N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.01 N/A N/A N/A N/A N/A
ENSMUST00000137385 N/A 115.715±23.29 N/A N/A N/A 1.925±0.39 N/A 0.892±0.00 0.079±0.03 1.953±0.27 N/A N/A N/A N/A
ENSMUST00000147580 0.601±0.00 8.256±0.45 N/A 8.576±0.00 0.661±0.16 N/A 0.055±0.00 N/A 0.100±0.07 0.211±0.00 0.343±0.01 0.586±0.14 0.143±0.00 1.539±0.10
ENSMUSG00000049709 ENSMUST00000055745 0.258±0.04 0.058±0.03 0.204±0.01 0.018±0.01 0.309±0.12 0.702±0.18 4.994±0.46 0.022±0.01 0.011±0.01 0.959±0.75 0.150±0.05 1.749±0.57 0.015±0.01 0.070±0.03
ENSMUSG00000081370 ENSMUST00000120160 0.065±0.04 N/A 0.005±0.00 0.093±0.01 0.078±0.03 N/A 0.024±0.00 N/A N/A 0.096±0.00 N/A 0.189±0.00 0.003±0.00 0.196±0.08
ENSMUSG00000085407 ENSMUST00000143715 0.144±0.12 0.125±0.06 0.072±0.00 1.245±0.04 0.074±0.06 0.038±0.01 0.039±0.02 0.030±0.01 0.008±0.00 0.755±0.13 N/A 0.304±0.15 0.181±0.10 29.773±2.71
ENSMUSG00000097220 ENSMUST00000180590 0.029±0.02 0.033±0.01 0.005±0.00 0.108±0.05 0.045±0.03 0.050±0.03 0.026±0.00 0.031±0.02 0.039±0.04 0.028±0.02 0.016±0.01 0.067±0.04 0.015±0.01 0.126±0.07

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