C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009DI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm434 VISTA 9606 1:93946469-94547443
GeneTranscriptPositionBiotype
ENSG00000117525 (F3)
coagulation factor III (thromboplastin, tissue factor) 		ENST00000334047 (F3-001) 94529225-94541800 protein_coding
ENST00000370207 (F3-002) 94529310-94541637 protein_coding
ENST00000478217 (F3-003) 94532997-94536164 processed_transcript
ENST00000480356 (F3-004) 94533106-94541759 processed_transcript
ENSG00000137962 (ARHGAP29)
Rho GTPase activating protein 29 		ENST00000260526 (ARHGAP29-001) 94171751-94237565 protein_coding
ENST00000370217 (ARHGAP29-002) 94201895-94237633 protein_coding
ENST00000482481 (ARHGAP29-003) 94176613-94195940 processed_transcript
ENST00000546444 (ARHGAP29-005) 94148988-94154829 retained_intron
ENST00000552844 (ARHGAP29-004) 94149847-94275068 nonsense_mediated_decay
ENSG00000178596 (GAPDHP29)
glyceraldehyde 3 phosphate dehydrogenase pseudogene 29 		ENST00000429913 (GAPDHP29-001) 94302038-94303022 processed_pseudogene
ENSG00000198691 (ABCA4)
ATP-binding cassette, sub-family A (ABC1), member 4 		ENST00000370225 (ABCA4-001) 93992837-94121132 protein_coding
ENST00000460514 (ABCA4-004) 94019582-94025595 processed_transcript
ENST00000465352 (ABCA4-002) 94001508-94010929 processed_transcript
ENST00000470771 (ABCA4-005) 94019400-94021367 processed_transcript
ENST00000472033 (ABCA4-003) 94059469-94061439 processed_transcript
ENST00000484388 (ABCA4-006) 94005375-94007752 processed_transcript
ENST00000536513 (ABCA4-201) 93992835-94063249 protein_coding
ENSG00000226835 (RP11-148B18.3)
 ENST00000418242 (RP11-148B18.3-001) 94333267-94334848 lincRNA
ENSG00000231363 (RP11-148B18.1)
 ENST00000413103 (RP11-148B18.1-001) 94247908-94249492 lincRNA
ENSG00000232918 (RP11-366L18.1)
 ENST00000442943 (RP11-366L18.1-001) 94406395-94406882 processed_pseudogene
ENSG00000233482 (RP11-78O9.1)
 ENST00000439455 (RP11-78O9.1-001) 94145111-94145619 antisense
ENSG00000236098 (RP11-148B18.4)
 ENST00000414039 (RP11-148B18.4-001) 94318479-94324569 lincRNA
ENSG00000264963 (RN7SL440P)
RNA, 7SL, cytoplasmic 440, pseudogene 		ENST00000577855 (RN7SL440P-201) 94150738-94151080 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0009DI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm434 VISTA 10090 3:121653542-122254391
GeneTranscriptPositionBiotype
ENSMUSG00000028124 (Gclm)
glutamate-cysteine ligase, modifier subunit 		ENSMUST00000029769 (Gclm-001) 122245557-122269984 protein_coding
ENSMUST00000137540 (Gclm-003) 122245712-122256971 processed_transcript
ENSMUST00000149983 (Gclm-002) 122255587-122266503 protein_coding
ENSMUST00000176445 (Gclm-005) 122246081-122265225 protein_coding
ENSMUST00000176761 (Gclm-004) 122261779-122264908 retained_intron
ENSMUST00000178826 (Gclm-201) 122245668-122266435 protein_coding
ENSMUSG00000028125 (Abca4)
ATP-binding cassette, sub-family A (ABC1), member 4 		ENSMUST00000013995 (Abca4-001) 122044443-122180061 protein_coding
ENSMUST00000126552 (Abca4-007) 122112030-122112571 processed_transcript
ENSMUST00000132199 (Abca4-002) 122046577-122097742 processed_transcript
ENSMUST00000136358 (Abca4-005) 122173115-122180061 retained_intron
ENSMUST00000136624 (Abca4-008) 122121754-122126467 retained_intron
ENSMUST00000137616 (Abca4-011) 122163818-122170326 retained_intron
ENSMUST00000139239 (Abca4-009) 122128271-122132729 processed_transcript
ENSMUST00000140913 (Abca4-006) 122120041-122128657 retained_intron
ENSMUST00000141135 (Abca4-004) 122132003-122180061 processed_transcript
ENSMUST00000144949 (Abca4-010) 122162317-122164319 retained_intron
ENSMUST00000150738 (Abca4-003) 122074456-122087931 processed_transcript
ENSMUSG00000028127 (Abcd3)
ATP-binding cassette, sub-family D (ALD), member 3 		ENSMUST00000029770 (Abcd3-001) 121758909-121815302 protein_coding
ENSMUST00000161742 (Abcd3-002) 121796037-121815207 retained_intron
ENSMUST00000162262 (Abcd3-003) 121786009-121814909 processed_transcript
ENSMUST00000162299 (Abcd3-004) 121758909-121768643 processed_transcript
ENSMUSG00000028128 (F3)
coagulation factor III 		ENSMUST00000029771 (F3-201) 121723537-121735052 protein_coding
ENSMUSG00000039831 (Arhgap29)
Rho GTPase activating protein 29 		ENSMUST00000037958 (Arhgap29-001) 121953229-122016677 protein_coding
ENSMUST00000127177 (Arhgap29-007) 121953316-122015005 nonsense_mediated_decay
ENSMUST00000127466 (Arhgap29-009) 122002989-122005799 retained_intron
ENSMUST00000128366 (Arhgap29-008) 121953231-121988915 protein_coding
ENSMUST00000137089 (Arhgap29-002) 121967830-122009914 protein_coding
ENSMUST00000137205 (Arhgap29-004) 121981543-121992892 retained_intron
ENSMUST00000141267 (Arhgap29-006) 121993632-122016154 protein_coding
ENSMUST00000150478 (Arhgap29-005) 121988869-121992566 retained_intron
ENSMUSG00000074248 (4930432M17Rik)
RIKEN cDNA 4930432M17 gene 		ENSMUST00000098646 (4930432M17Rik-201) 121671317-121682835 protein_coding
ENSMUSG00000078592 (Gm4609)
predicted gene 4609 		ENSMUST00000106443 (Gm4609-001) 122230195-122231196 processed_pseudogene
ENSMUSG00000092934 (Gm22903)
predicted gene, 22903 		ENSMUST00000175193 (Gm22903-201) 122232535-122232636 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009DI_0001ENSG00000117525ENST00000334047ENST00000370207ENST00000478217ENST00000480356ENSG00000137962ENST00000260526ENST00000370217ENST00000482481ENST00000546444ENST00000552844ENSG00000178596ENST00000429913ENSG00000198691ENST00000370225ENST00000460514ENST00000465352ENST00000470771ENST00000472033ENST00000484388ENST00000536513ENSG00000226835ENST00000418242ENSG00000231363ENST00000413103ENSG00000232918ENST00000442943ENSG00000233482ENST00000439455ENSG00000236098ENST00000414039ENSG00000264963ENST00000577855CIL_0009DI_0002ENSMUSG00000028124ENSMUST00000029769ENSMUST00000137540ENSMUST00000149983ENSMUST00000176445ENSMUST00000176761ENSMUST00000178826ENSMUSG00000028125ENSMUST00000013995ENSMUST00000126552ENSMUST00000132199ENSMUST00000136358ENSMUST00000136624ENSMUST00000137616ENSMUST00000139239ENSMUST00000140913ENSMUST00000141135ENSMUST00000144949ENSMUST00000150738ENSMUSG00000028127ENSMUST00000029770ENSMUST00000161742ENSMUST00000162262ENSMUST00000162299ENSMUSG00000028128ENSMUST00000029771ENSMUSG00000039831ENSMUST00000037958ENSMUST00000127177ENSMUST00000127466ENSMUST00000128366ENSMUST00000137089ENSMUST00000137205ENSMUST00000141267ENSMUST00000150478ENSMUSG00000074248ENSMUST00000098646ENSMUSG00000078592ENSMUST00000106443ENSMUSG00000092934ENSMUST00000175193
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009DI_0001ENSG00000117525ENST00000334047ENST00000370207ENST00000478217ENST00000480356ENSG00000137962ENST00000260526ENST00000370217ENST00000482481ENST00000552844ENSG00000178596ENST00000429913ENSG00000198691ENST00000370225ENST00000465352ENST00000470771ENST00000536513ENSG00000226835ENST00000418242ENSG00000231363ENST00000413103ENSG00000232918ENST00000442943ENSG00000233482ENST00000439455ENSG00000236098ENST00000414039ENSG00000264963ENST00000577855CIL_0009DI_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000117525 ENST00000334047 45.199±0.00 6.772±0.00 0.486±0.00 12.021±0.00 11.920±8.48 8.129±3.17 6.658±1.13 4.050±3.97 0.185±0.00 20.092±10.03 1.356±0.00 14.947±7.17 34.400±6.14 22.059±8.09
ENST00000370207 N/A N/A N/A N/A N/A N/A N/A 2.097±0.00 0.540±0.00 19.064±0.00 0.354±0.00 8.980±6.25 34.289±0.00 12.573±0.00
ENST00000478217 N/A N/A 0.622±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480356 N/A N/A 0.532±0.00 N/A 6.640±0.00 6.023±0.00 N/A 0.317±0.00 N/A 6.958±0.00 N/A 3.408±0.00 N/A N/A
ENSG00000137962 ENST00000260526 11.252±0.00 8.387±0.00 3.254±0.00 1.996±0.60 2.328±0.12 1.313±0.22 0.902±0.00 7.517±4.18 2.203±0.21 12.327±1.85 1.167±0.47 2.582±1.00 3.170±1.73 5.854±0.45
ENST00000370217 N/A N/A 2.758±0.00 N/A N/A N/A N/A N/A N/A N/A 1.306±0.00 N/A N/A N/A
ENST00000482481 N/A 0.838±0.00 N/A N/A N/A N/A N/A 0.964±0.00 1.008±0.00 2.897±0.00 N/A 1.298±0.00 N/A N/A
ENST00000546444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552844 N/A N/A N/A N/A N/A 0.489±0.00 N/A 1.327±0.00 1.788±0.00 N/A 0.659±0.00 N/A N/A 1.420±0.00
ENSG00000178596 ENST00000429913 N/A N/A 0.612±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.02
ENSG00000198691 ENST00000370225 N/A N/A 0.257±0.00 0.125±0.05 N/A 0.009±0.00 0.010±0.00 0.402±0.00 N/A N/A N/A 0.026±0.00 0.089±0.00 N/A
ENST00000460514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465352 N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A 0.352±0.00
ENST00000470771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.162±0.00 N/A N/A
ENST00000472033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536513 N/A N/A 0.206±0.00 N/A 0.075±0.00 0.086±0.00 0.047±0.00 0.431±0.00 N/A 0.079±0.00 N/A N/A 0.116±0.03 0.170±0.02
ENSG00000226835 ENST00000418242 N/A 0.038±0.00 N/A N/A N/A N/A N/A N/A 0.173±0.00 0.687±0.00 N/A 0.099±0.00 0.263±0.03 2.127±1.04
ENSG00000231363 ENST00000413103 N/A N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A N/A N/A 1.424±0.44
ENSG00000232918 ENST00000442943 N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A 0.023±0.00 N/A N/A N/A
ENSG00000233482 ENST00000439455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.05
ENSG00000236098 ENST00000414039 0.025±0.00 N/A N/A 0.083±0.00 0.052±0.00 N/A 0.024±0.00 0.355±0.00 N/A 0.158±0.00 N/A N/A 0.104±0.01 0.047±0.00
ENSG00000264963 ENST00000577855 0.821±0.00 0.617±0.00 0.286±0.00 0.389±0.12 N/A 0.208±0.00 0.103±0.03 0.048±0.00 0.042±0.00 0.221±0.15 N/A 0.484±0.24 1.173±0.00 0.701±0.44
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028124 ENSMUST00000029769 3.491±0.87 13.523±2.48 8.519±0.01 3.164±0.49 5.371±3.37 7.161±1.09 1.263±0.32 21.560±6.54 20.752±4.67 6.276±2.10 1.231±0.50 8.201±4.14 4.916±3.37 2.067±1.12
ENSMUST00000137540 5.307±1.47 48.824±20.07 N/A N/A 25.105±11.08 60.288±3.45 N/A 45.379±30.86 46.522±17.74 20.892±0.00 N/A 23.373±6.26 N/A N/A
ENSMUST00000149983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.181±0.00 3.985±0.00
ENSMUST00000176445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176761 N/A N/A N/A 22.502±0.00 N/A N/A N/A N/A N/A N/A N/A 27.233±0.00 47.239±14.33 13.777±0.00
ENSMUST00000178826 8.482±1.04 N/A 17.016±1.47 5.502±0.00 11.342±5.53 N/A 3.742±0.86 40.772±5.40 41.350±17.36 N/A 7.257±1.17 11.704±2.02 17.445±7.39 8.650±2.05
ENSMUSG00000028125 ENSMUST00000013995 0.225±0.00 N/A N/A 0.293±0.13 0.080±0.04 0.044±0.00 0.058±0.01 0.881±0.43 0.017±0.01 N/A 0.042±0.01 1.312±0.44 0.230±0.16 0.083±0.00
ENSMUST00000126552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132199 N/A N/A N/A N/A N/A 0.056±0.01 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136358 N/A 0.412±0.00 0.132±0.00 N/A N/A 0.083±0.00 N/A N/A 0.058±0.00 N/A N/A N/A 0.691±0.00 N/A
ENSMUST00000136624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140913 N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A 0.039±0.00 N/A N/A N/A N/A 0.225±0.00
ENSMUST00000141135 0.695±0.03 0.227±0.14 0.202±0.04 0.284±0.05 0.225±0.06 0.115±0.05 0.782±0.23 2.165±0.61 0.118±0.08 2.408±0.32 0.425±0.13 1.918±0.70 1.088±0.50 0.115±0.04
ENSMUST00000144949 N/A N/A N/A N/A N/A 0.241±0.07 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028127 ENSMUST00000029770 5.984±2.03 5.275±1.64 18.482±6.22 7.172±3.45 3.903±1.06 7.503±3.54 2.936±1.51 18.996±7.13 21.598±15.85 8.962±3.75 8.468±1.84 3.734±4.25 10.510±4.10 1.800±1.44
ENSMUST00000161742 N/A 19.766±6.89 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028128 ENSMUST00000029771 33.788±16.42 16.397±4.12 36.012±8.25 5.264±3.90 27.054±11.70 35.584±1.74 10.265±2.63 10.522±2.60 0.970±0.68 31.439±7.20 1.552±0.41 35.977±13.62 20.495±14.64 1.716±0.58
ENSMUSG00000039831 ENSMUST00000037958 N/A 1.313±0.11 1.662±0.21 0.797±0.13 N/A 0.942±0.00 1.546±0.00 1.886±0.53 0.570±0.27 4.489±0.05 0.888±0.18 5.465±0.42 3.793±1.13 9.720±0.84
ENSMUST00000127177 10.220±2.11 2.282±0.11 N/A 1.438±0.00 6.986±1.54 1.301±0.31 4.158±0.55 3.392±0.66 2.809±0.76 10.056±1.57 N/A 7.788±1.49 5.384±0.00 20.799±2.65
ENSMUST00000127466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.320±0.37 17.316±0.52 10.394±5.38 N/A
ENSMUST00000137205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141267 37.148±6.01 14.101±3.49 5.519±0.57 3.399±0.23 21.637±5.63 6.949±1.11 11.598±0.69 17.330±4.70 6.818±4.07 45.448±2.64 2.177±0.70 49.535±11.60 16.801±7.92 24.560±2.13
ENSMUST00000150478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074248 ENSMUST00000098646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00
ENSMUSG00000078592 ENSMUST00000106443 0.222±0.06 0.083±0.05 0.302±0.12 5.462±5.42 0.715±0.78 0.128±0.06 0.406±0.19 0.593±0.14 1.845±5.68 0.101±0.09 0.773±0.29 0.197±0.11 0.130±0.07 0.040±0.01
ENSMUSG00000092934 ENSMUST00000175193 N/A N/A N/A 873.259±0.00 N/A N/A N/A N/A 212.370±0.00 N/A N/A N/A N/A N/A

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