C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, beta 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000029308 itgb4-001 ENSDARG00000028507 7955 + 8:13623711-13676538 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000029308
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000029308 0.831±0.53 0.241±0.10 1.054±0.00 0.041±0.00 0.935±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002K8 CIL_0002K8_0001 CGP 8:13581701-13676538

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0007154 IEA cell communication
GO:0007155 IEA cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0031581 IEA hemidesmosome assembly
GO:0048870 IEA cell motility

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021107 Itgb4-001 protein_coding Mus_musculus 0 281
ENSMUST00000068981 Itgb4-002 protein_coding Mus_musculus 0 281
ENSMUST00000106458 Itgb4-004 protein_coding Mus_musculus 0 281
ENSMUST00000106460 Itgb4-003 protein_coding Mus_musculus 0 281
ENSMUST00000106461 Itgb4-201 protein_coding Mus_musculus 0 281
ENSMUST00000151691 Itgb4-005 processed_transcript Mus_musculus 0 281
ENSMUST00000169928 Itgb4-202 protein_coding Mus_musculus 0 281
ENST00000200181 ITGB4-001 protein_coding Homo_sapiens 0 283
ENST00000449880 ITGB4-003 protein_coding Homo_sapiens 0 283
ENST00000450894 ITGB4-002 protein_coding Homo_sapiens 0 283
ENST00000579662 ITGB4-007 protein_coding Homo_sapiens 0 283
ENST00000580542 ITGB4-004 retained_intron Homo_sapiens 0 283
ENST00000582629 ITGB4-008 protein_coding Homo_sapiens 6e-27 124
ENST00000584558 ITGB4-005 processed_transcript Homo_sapiens 0 283

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