C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000044735 gria1b-001 ENSDARG00000032714 7955 - 21:25545819-25644231 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005215 IEA transporter activity
GO:0005234 IEA extracellular-glutamate-gated ion channel activity
GO:0005886 IEA plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0030054 IEA cell junction
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027020 Gria4-201 protein_coding Mus_musculus 0 573
ENSMUST00000075316 Gria2-201 protein_coding Mus_musculus 0 652
ENSMUST00000094179 Gria1-005 protein_coding Mus_musculus 0 771
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 298
ENSMUST00000115103 Gria3-004 protein_coding Mus_musculus 0 569
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 481
ENSMUST00000156721 Gria3-003 retained_intron Mus_musculus 0 233
ENSMUST00000165288 Gria3-201 protein_coding Mus_musculus 0 569
ENST00000264426 GRIA2-002 protein_coding Homo_sapiens 0 619
ENST00000285900 GRIA1-001 protein_coding Homo_sapiens 0 734
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 3e-32 145
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 562
ENST00000503980 GRIA2-013 retained_intron Homo_sapiens 0 226
ENST00000518142 GRIA1-013 protein_coding Homo_sapiens 0 734
ENST00000518783 GRIA1-007 protein_coding Homo_sapiens 0 734
ENST00000521843 GRIA1-010 protein_coding Homo_sapiens 0 734
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 562
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 228
ENST00000533094 GRIA4-008 processed_transcript Homo_sapiens 0 231
ENST00000541091 GRIA3-002 protein_coding Homo_sapiens 0 577
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 483
ENST00000622768 GRIA3-202 protein_coding Homo_sapiens 0 577

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