C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, N type, alpha 1B subunit, a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000047719 cacna1ba-001 ENSDARG00000021735 7955 - 5:30934886-31126735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverENSDART00000047719
Transcript ID Kidney Liver
ENSDART00000047719 0.082±0.00 0.011±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QH CIL_0000QH_0001 CGP 5:30934886-31153219

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005245 IEA voltage-gated calcium channel activity
GO:0005262 IEA calcium channel activity
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006816 IEA calcium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0055085 IEA transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041342 Cacna1b-002 protein_coding Mus_musculus 0 688
ENSMUST00000070864 Cacna1b-001 protein_coding Mus_musculus 0 688
ENSMUST00000100348 Cacna1b-201 protein_coding Mus_musculus 0 1125
ENSMUST00000102939 Cacna1b-004 protein_coding Mus_musculus 0 688
ENSMUST00000114447 Cacna1b-003 protein_coding Mus_musculus 0 1120
ENST00000277549 CACNA1B-201 protein_coding Homo_sapiens 0 621
ENST00000277551 CACNA1B-002 protein_coding Homo_sapiens 0 621
ENST00000371355 CACNA1B-202 protein_coding Homo_sapiens 0 1122
ENST00000371357 CACNA1B-005 protein_coding Homo_sapiens 0 1127
ENST00000371363 CACNA1B-003 protein_coding Homo_sapiens 0 621
ENST00000371372 CACNA1B-001 protein_coding Homo_sapiens 0 621

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