C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1Aa (SWI-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000084263 arid1aa-201 ENSDARG00000079879 7955 + 16:36369831-36402982 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000084263
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000084263 7.381±4.15 1.926±1.95 4.057±0.00 0.847±0.00 2.907±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ZO CIL_0001ZO_0001 CGP 16:36087312-36342062
CIL_0002JO CIL_0002JO_0001 CGP 16:36207345-36342062

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005488 IEA binding
GO:0005622 IEA intracellular

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105897 Arid1a-201 protein_coding Mus_musculus 9.80909e-45 187
ENSMUST00000145664 Arid1a-001 protein_coding Mus_musculus 9.80909e-45 187
ENST00000324856 ARID1A-001 protein_coding Homo_sapiens 0 518
ENST00000374152 ARID1A-003 protein_coding Homo_sapiens 0 508
ENST00000430799 ARID1A-009 protein_coding Homo_sapiens 0 518
ENST00000457599 ARID1A-002 protein_coding Homo_sapiens 0 518
ENST00000466382 ARID1A-004 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000532781 ARID1A-006 nonsense_mediated_decay Homo_sapiens 0 518

Loading