C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VAa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000088037 myo5aa-201 ENSDARG00000061635 7955 + 18:37337381-37479503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyENSDART00000088037
Transcript ID Heart Kidney
ENSDART00000088037 0.049±0.00 0.119±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YK CIL_0004YK_0001 CGP 18:37322598-37479503

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003774 IEA motor activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016459 IEA myosin complex
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000123128 Myo5a-001 protein_coding Mus_musculus 0 802
ENSMUST00000136604 Myo5a-002 processed_transcript Mus_musculus 0 732
ENSMUST00000136731 Myo5a-009 protein_coding Mus_musculus 0 732
ENSMUST00000148144 Myo5a-011 protein_coding Mus_musculus 0 732
ENSMUST00000155282 Myo5a-003 protein_coding Mus_musculus 0 732
ENST00000356338 MYO5A-008 protein_coding Homo_sapiens 0 1125
ENST00000358212 MYO5A-201 protein_coding Homo_sapiens 0 1125
ENST00000399231 MYO5A-001 protein_coding Homo_sapiens 0 1125
ENST00000399233 MYO5A-202 protein_coding Homo_sapiens 0 1125
ENST00000553916 MYO5A-007 protein_coding Homo_sapiens 0 1125
ENST00000556196 MYO5A-006 nonsense_mediated_decay Homo_sapiens 0 1035
ENST00000613858 MYO5A-203 protein_coding Homo_sapiens 0 1125

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