C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000113219 TNRC6A-201 ENSDARG00000079688 7955 + 3:35597099-35618661 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000113219
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000113219 9.890±5.17 8.293±2.21 8.206±0.51 0.649±0.00 7.745±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V8 CIL_0003V8_0001 CGP 3:35491691-35618661

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094053 Tnrc6a-201 protein_coding Mus_musculus 0 821
ENST00000315183 TNRC6A-003 protein_coding Homo_sapiens 0 819
ENST00000360565 SCAF1-001 protein_coding Homo_sapiens 0.00001 58
ENST00000395799 TNRC6A-001 protein_coding Homo_sapiens 0 819
ENST00000450465 TNRC6A-004 protein_coding Homo_sapiens 0 819
ENST00000464539 TNRC6A-007 retained_intron Homo_sapiens 3e-25 121
ENST00000491718 TNRC6A-002 nonsense_mediated_decay Homo_sapiens 0 819
ENST00000569098 TNRC6A-011 protein_coding Homo_sapiens 0 305
ENST00000569376 TNRC6A-013 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000569634 TNRC6A-012 retained_intron Homo_sapiens 0 379
ENST00000622360 SCAF1-201 protein_coding Homo_sapiens 0.00001 58

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