C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 6C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000113726 TNRC6C (2 of 3)-201 ENSDARG00000076847 7955 - 3:34344054-34412362 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000113726
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000113726 2.891±0.00 4.148±2.22 7.009±0.31 0.077±0.00 1.538±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026658 Tnrc6c-201 protein_coding Mus_musculus 0 797
ENSMUST00000106344 Tnrc6c-001 protein_coding Mus_musculus 0 797
ENSMUST00000138299 Tnrc6c-003 protein_coding Mus_musculus 0 891
ENSMUST00000140347 Tnrc6c-005 retained_intron Mus_musculus 0 303
ENSMUST00000141115 Tnrc6c-004 retained_intron Mus_musculus 0 414
ENST00000301624 TNRC6C-201 protein_coding Homo_sapiens 0 894
ENST00000335749 TNRC6C-202 protein_coding Homo_sapiens 0 660
ENST00000588061 TNRC6C-002 protein_coding Homo_sapiens 0 894
ENST00000588847 TNRC6C-001 protein_coding Homo_sapiens 0 660

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