C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAR-related orphan receptor A, paralog a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000121449 roraa-201 ENSDARG00000031768 7955 + 25:34896334-35011591 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSDART00000121449
Transcript ID Liver
ENSDART00000121449 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GZ CIL_0005GZ_0001 CGP 25:34896334-35055335

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029795 Rorc-001 protein_coding Mus_musculus 1e-25 122
ENST00000261523 RORA-003 protein_coding Homo_sapiens 0 896
ENST00000309157 RORA-002 protein_coding Homo_sapiens 0 896
ENST00000335670 RORA-001 protein_coding Homo_sapiens 0 889
ENST00000449337 RORA-005 protein_coding Homo_sapiens 0 935
ENST00000551975 RORA-004 nonsense_mediated_decay Homo_sapiens 0 385
ENST00000557822 RORA-008 retained_intron Homo_sapiens 3e-21 106
ENST00000558234 RORA-006 retained_intron Homo_sapiens 2e-34 152
ENST00000559343 RORA-009 protein_coding Homo_sapiens 0 233
ENST00000560004 RORA-012 processed_transcript Homo_sapiens 0 320

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