C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000121680 TPM1-202 ENSDARG00000087402 7955 - 25:33891097-33948552 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverENSDART00000121680
Transcript ID Heart Kidney Liver
ENSDART00000121680 30.369±11.25 40.126±23.47 0.105±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OW CIL_0004OW_0001 CGP 25:33875040-33948552
CIL_0005H2 CIL_0005H2_0001 CGP 25:33891094-34104360

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030185 Tpm1-002 protein_coding Mus_musculus 0 556
ENSMUST00000034928 Tpm1-008 protein_coding Mus_musculus 0 556
ENSMUST00000050905 Tpm1-004 protein_coding Mus_musculus 0 440
ENSMUST00000113684 Tpm1-020 protein_coding Mus_musculus 0 375
ENSMUST00000113685 Tpm1-003 protein_coding Mus_musculus 0 556
ENSMUST00000113686 Tpm1-014 protein_coding Mus_musculus 0 492
ENSMUST00000113687 Tpm1-012 protein_coding Mus_musculus 0 556
ENSMUST00000113689 Tpm1-021 protein_coding Mus_musculus 0 379
ENSMUST00000113690 Tpm1-013 protein_coding Mus_musculus 0 496
ENSMUST00000113693 Tpm1-011 protein_coding Mus_musculus 0 560
ENSMUST00000113695 Tpm1-016 protein_coding Mus_musculus 0 556
ENSMUST00000113696 Tpm1-015 protein_coding Mus_musculus 0 440
ENSMUST00000113697 Tpm1-006 protein_coding Mus_musculus 0 505
ENSMUST00000113701 Tpm1-010 protein_coding Mus_musculus 0 560
ENSMUST00000113705 Tpm1-007 protein_coding Mus_musculus 0 676
ENSMUST00000113707 Tpm1-001 protein_coding Mus_musculus 0 621
ENSMUST00000129466 Tpm1-019 retained_intron Mus_musculus 0 357
ENSMUST00000129733 Tpm1-009 nonsense_mediated_decay Mus_musculus 0 219
ENSMUST00000131279 Tpm1-018 processed_transcript Mus_musculus 0 329
ENSMUST00000139046 Tpm1-017 nonsense_mediated_decay Mus_musculus 0 287
ENST00000329305 TPM2-006 protein_coding Homo_sapiens 0 449
ENST00000360958 TPM2-002 protein_coding Homo_sapiens 0 442
ENST00000378292 TPM2-001 protein_coding Homo_sapiens 0 383
ENST00000378300 TPM2-005 protein_coding Homo_sapiens 0 446
ENST00000471212 TPM2-003 retained_intron Homo_sapiens 0 320
ENST00000486018 TPM2-004 retained_intron Homo_sapiens 9e-32 141
ENST00000604975 TPM2-007 retained_intron Homo_sapiens 0 215

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