C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia transcription factor 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000122028 pbx1b-201 ENSDARG00000089550 7955 + 6:2064421-2193122 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleENSDART00000122028
Transcript ID Liver Muscle
ENSDART00000122028 0.034±0.00 0.208±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007M6 CIL_0007M6_0005 UCNEbase 6:2040548-2134418

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064438 Pbx1-005 protein_coding Mus_musculus 0 662
ENSMUST00000072863 Pbx1-201 protein_coding Mus_musculus 0 828
ENSMUST00000176540 Pbx1-002 protein_coding Mus_musculus 0 745
ENSMUST00000176790 Pbx1-004 protein_coding Mus_musculus 0 955
ENSMUST00000188912 Pbx1-001 protein_coding Mus_musculus 0 881
ENST00000367897 PBX1-002 protein_coding Homo_sapiens 0 961
ENST00000375050 PBX2-001 protein_coding Homo_sapiens 0 671
ENST00000383270 PBX2-001 protein_coding Homo_sapiens 0 671
ENST00000420432 PBX2-001 protein_coding Homo_sapiens 0 671
ENST00000420696 PBX1-001 protein_coding Homo_sapiens 0 756
ENST00000431537 PBX2-001 protein_coding Homo_sapiens 0 671
ENST00000433552 PBX2-001 protein_coding Homo_sapiens 0 671
ENST00000453487 PBX2-001 protein_coding Homo_sapiens 0 671
ENST00000453961 PBX2-001 protein_coding Homo_sapiens 0 671
ENST00000461385 PBX2-002 retained_intron Homo_sapiens 0 671
ENST00000462393 PBX2-004 retained_intron Homo_sapiens 0 545
ENST00000465089 PBX1-005 retained_intron Homo_sapiens 0 215
ENST00000468104 PBX1-004 processed_transcript Homo_sapiens 0 551
ENST00000473198 PBX2-004 retained_intron Homo_sapiens 0 545
ENST00000478678 PBX2-002 retained_intron Homo_sapiens 0 671
ENST00000480009 PBX2-004 retained_intron Homo_sapiens 0 545
ENST00000480293 PBX2-002 retained_intron Homo_sapiens 0 671
ENST00000482110 PBX1-009 protein_coding Homo_sapiens 0 368
ENST00000485304 PBX2-002 retained_intron Homo_sapiens 0 671
ENST00000488105 PBX2-004 retained_intron Homo_sapiens 0 545
ENST00000489815 PBX2-002 retained_intron Homo_sapiens 0 671
ENST00000493219 PBX2P1-001 processed_pseudogene Homo_sapiens 0 643
ENST00000494630 PBX2-002 retained_intron Homo_sapiens 0 671
ENST00000496120 PBX1-016 processed_transcript Homo_sapiens 0 553
ENST00000496171 PBX2-004 retained_intron Homo_sapiens 0 545
ENST00000497588 PBX2-004 retained_intron Homo_sapiens 0 545
ENST00000498292 PBX2-002 retained_intron Homo_sapiens 0 671
ENST00000498723 PBX2-004 retained_intron Homo_sapiens 0 545
ENST00000540236 PBX1-201 protein_coding Homo_sapiens 0 551
ENST00000558837 PBX1-019 protein_coding Homo_sapiens 0 383
ENST00000559240 PBX1-012 protein_coding Homo_sapiens 0 684
ENST00000559578 PBX1-013 protein_coding Homo_sapiens 0 438
ENST00000560469 PBX1-015 processed_transcript Homo_sapiens 0 549
ENST00000560641 PBX1-017 protein_coding Homo_sapiens 0 549
ENST00000612123 PBX1-202 protein_coding Homo_sapiens 0 756

Loading