C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell division cycle 45
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000028 Cdc45-001 ENSMUSG00000000028 10090 - 16:18780447-18811972 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverOvaryPlacentaTestisENSMUST00000000028
Transcript ID Adipose Brain Breast Colon Liver Ovary Placenta Testis
ENSMUST00000000028 4.487±1.42 6.242±2.04 2.145±0.28 2.183±0.00 23.910±15.60 4.069±1.19 10.418±4.30 9.723±2.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0002 VISTA 16:18254168-18857637
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684
CIL_0000RN CIL_0000RN_0002 CGP 16:18776847-18811987
CIL_0006PK CIL_0006PK_0002 CGP 16:18780447-18835261

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005813 IEA centrosome
GO:0006270 IEA DNA replication initiation
GO:0007049 IEA cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263201 CDC45-201 protein_coding Homo_sapiens 0 2113
ENST00000404724 CDC45-002 protein_coding Homo_sapiens 0 1652
ENST00000407835 CDC45-001 protein_coding Homo_sapiens 0 2113
ENST00000428937 CDC45-008 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000437685 CDC45-202 protein_coding Homo_sapiens 0 1432
ENST00000438587 CDC45-003 protein_coding Homo_sapiens 0 532
ENST00000455750 CDC45-004 protein_coding Homo_sapiens 0 466
ENST00000471470 CDC45-009 retained_intron Homo_sapiens 0 665
ENST00000483431 CDC45-007 processed_transcript Homo_sapiens 0 651
ENST00000487669 CDC45-006 retained_intron Homo_sapiens 0 566
ENST00000491520 CDC45-005 retained_intron Homo_sapiens 0 357
ENST00000493724 CDC45-010 retained_intron Homo_sapiens 0 329

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