C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C1D nuclear receptor co-repressor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000594 C1d-001 ENSMUSG00000000581 10090 + 11:17257594-17269176 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000594
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000594 1.723±0.37 0.865±0.41 8.989±1.99 9.795±4.03 1.016±0.39 0.903±0.39 1.512±0.45 2.360±0.83 4.967±3.06 1.458±0.72 3.264±1.74 2.486±2.76 4.378±1.11 0.418±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I2 CIL_0008I2_0002 VISTA 11:16884831-17492556
CIL_0007JR CIL_0007JR_0004 UCNEbase 11:17198316-19679637

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000460 IEA maturation of 5.8S rRNA
GO:0003677 IDA DNA binding
GO:0003714 IDA transcription corepressor activity
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0016922 IDA ligand-dependent nuclear receptor binding
GO:0017053 IDA transcriptional repressor complex
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355848 C1D-001 protein_coding Homo_sapiens 0 523
ENST00000407324 C1D-002 protein_coding Homo_sapiens 0 523
ENST00000409302 C1D-007 protein_coding Homo_sapiens 0 527
ENST00000410067 C1D-006 protein_coding Homo_sapiens 0 534
ENST00000418167 C1DP2-001 processed_pseudogene Homo_sapiens 0 455
ENST00000426049 C1DP1-001 processed_pseudogene Homo_sapiens 0 455
ENST00000479484 C1D-004 retained_intron Homo_sapiens 0 364
ENST00000545067 CCDC7-204 protein_coding Homo_sapiens 0 292

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