C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000704 Hoxb6-201 ENSMUSG00000000690 10090 + 11:96299171-96301568 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000704
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000704 5.109±1.49 31.959±4.08 1.297±1.06 4.724±1.30 2.963±0.77 0.050±0.00 12.081±2.86 0.032±0.02 1.663±0.88 0.352±0.17 4.178±2.03 0.330±0.19 0.476±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0000W8 CIL_0000W8_0003 CGP 11:96292476-96306121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0034101 IMP erythrocyte homeostasis
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000012470 hoxb4a-001 protein_coding Danio_rerio 0.00000000000003 84
ENSDART00000151584 hoxb4a-002 protein_coding Danio_rerio 0.00000000000003 84
ENST00000222726 HOXA5-001 protein_coding Homo_sapiens 5e-23 113
ENST00000225648 HOXB6-002 protein_coding Homo_sapiens 0 1482
ENST00000239144 HOXB8-001 protein_coding Homo_sapiens 1e-34 152
ENST00000239165 HOXB7-001 protein_coding Homo_sapiens 0 243
ENST00000467314 HOXB7-003 processed_transcript Homo_sapiens 0 243
ENST00000484302 HOXB6-001 protein_coding Homo_sapiens 0 1483
ENST00000498634 HOXB8-003 protein_coding Homo_sapiens 1e-28 130
ENST00000520854 HOXA5-002 processed_transcript Homo_sapiens 9e-24 113
ENST00000567101 HOXB7-008 processed_transcript Homo_sapiens 0 243
ENST00000576562 HOXB8-002 protein_coding Homo_sapiens 5e-35 152

Loading