C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000804 Ddx3x-001 ENSMUSG00000000787 10090 + X:13280970-13294052 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000804
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000804 25.262±7.71 16.784±2.67 34.555±5.36 36.376±8.56 17.875±1.18 17.658±2.66 17.577±4.13 26.291±3.77 28.385±8.71 29.003±3.93 30.645±2.15 36.231±33.02 70.881±16.93 3.601±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QB CIL_0005QB_0002 CGP X:13071498-13294052
CIL_0007LW CIL_0007LW_0002 UCNEbase X:13169486-13522078
CIL_0001X4 CIL_0001X4_0003 CGP X:13280970-13489313

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0003723 ISS RNA binding
GO:0004003 ISS ATP-dependent DNA helicase activity
GO:0004004 ISS ATP-dependent RNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005741 IEA mitochondrial outer membrane
GO:0005852 ISS eukaryotic translation initiation factor 3 complex
GO:0006200 IEA ATP catabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0007059 ISS chromosome segregation
GO:0008134 ISS transcription factor binding
GO:0008143 ISS poly(A) binding
GO:0008190 ISS eukaryotic initiation factor 4E binding
GO:0008625 ISS extrinsic apoptotic signaling pathway via death domain receptors
GO:0009615 ISS response to virus
GO:0010494 ISS cytoplasmic stress granule
GO:0010501 ISS RNA secondary structure unwinding
GO:0016887 ISS ATPase activity
GO:0017148 ISS negative regulation of translation
GO:0022627 ISS cytosolic small ribosomal subunit
GO:0030307 ISS positive regulation of cell growth
GO:0031333 ISS negative regulation of protein complex assembly
GO:0031369 ISS translation initiation factor binding
GO:0032508 ISS DNA duplex unwinding
GO:0034063 ISS stress granule assembly
GO:0035556 ISS intracellular signal transduction
GO:0035613 ISS RNA stem-loop binding
GO:0042256 ISS mature ribosome assembly
GO:0043024 ISS ribosomal small subunit binding
GO:0043065 ISS positive regulation of apoptotic process
GO:0043066 ISS negative regulation of apoptotic process
GO:0043154 ISS negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043280 ISS positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045087 ISS innate immune response
GO:0045727 ISS positive regulation of translation
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0045948 ISS positive regulation of translational initiation
GO:0048027 ISS mRNA 5'-UTR binding
GO:0071243 ISS cellular response to arsenic-containing substance
GO:0071470 ISS cellular response to osmotic stress
GO:0097193 ISS intrinsic apoptotic signaling pathway
GO:1900087 ISS positive regulation of G1/S transition of mitotic cell cycle
GO:2001243 ISS negative regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006867 ddx3-001 protein_coding Danio_rerio 0 339
ENSDART00000102148 pl10-001 protein_coding Danio_rerio 0 233
ENST00000336079 DDX3Y-003 protein_coding Homo_sapiens 0 2822
ENST00000360160 DDX3Y-001 protein_coding Homo_sapiens 0 2553
ENST00000399959 DDX3X-001 protein_coding Homo_sapiens 0 6972
ENST00000441189 DDX3X-005 protein_coding Homo_sapiens 0 1022
ENST00000451232 RP11-5G18.2-001 processed_pseudogene Homo_sapiens 0 252
ENST00000457138 DDX3X-201 protein_coding Homo_sapiens 0 6578
ENST00000463199 DDX3Y-007 processed_transcript Homo_sapiens 0 233
ENST00000478993 DDX3X-002 nonsense_mediated_decay Homo_sapiens 0 3291
ENST00000480592 DDX3X-003 processed_transcript Homo_sapiens 0 270
ENST00000495478 DDX3Y-008 processed_transcript Homo_sapiens 0 409
ENST00000506389 DDX3YP3-001 processed_pseudogene Homo_sapiens 0 1927
ENST00000517322 RP11-613H2.2-001 processed_pseudogene Homo_sapiens 0 1888
ENST00000542215 DDX3X-004 processed_transcript Homo_sapiens 0 1088
ENST00000610559 DDX3X-010 processed_transcript Homo_sapiens 3e-40 169
ENST00000611546 DDX3X-008 processed_transcript Homo_sapiens 0 385
ENST00000611968 DDX3X-012 protein_coding Homo_sapiens 0 464
ENST00000615313 DDX3X-007 processed_transcript Homo_sapiens 0 405
ENST00000615742 DDX3X-011 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000616050 DDX3X-013 processed_transcript Homo_sapiens 0 625
ENST00000622198 DDX3X-009 processed_transcript Homo_sapiens 0 385
ENST00000623700 DDX3Y-201 protein_coding Homo_sapiens 0 2128

Loading