C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001226 Sh3bp1-001 ENSMUSG00000022436 10090 + 15:78899768-78912047 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001226
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001226 9.576±4.60 6.356±1.00 10.872±0.44 31.592±5.77 6.957±1.39 1.715±0.71 4.280±0.70 7.012±6.85 14.068±2.40 0.707±0.58 12.047±5.18 4.520±2.23 0.738±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00040D CIL_00040D_0002 CGP 15:78877190-78919517

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0007165 IEA signal transduction
GO:0017124 IPI SH3 domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357436 SH3BP1-001 protein_coding Homo_sapiens 0 1993
ENST00000417536 SH3BP1-002 nonsense_mediated_decay Homo_sapiens 0 1640
ENST00000451997 SH3BP1-008 nonsense_mediated_decay Homo_sapiens 0 1574
ENST00000466097 SH3BP1-005 retained_intron Homo_sapiens 0 667
ENST00000469947 SH3BP1-003 retained_intron Homo_sapiens 0 1338
ENST00000495174 SH3BP1-006 processed_transcript Homo_sapiens 0 1053

Loading