C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001538 Pax9-201 ENSMUSG00000001497 10090 + 12:56695639-56712822 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENSMUST00000001538
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENSMUST00000001538 0.008±0.00 0.014±0.00 0.024±0.01 0.023±0.00 0.096±0.02 0.099±0.08 1.152±1.01 0.011±0.00 0.006±0.00 0.101±0.01 0.429±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LS CIL_0007LS_0003 UCNEbase 12:55566857-57467023
CIL_0008XR CIL_0008XR_0002 VISTA 12:56140796-56741827
CIL_0008R1 CIL_0008R1_0002 VISTA 12:56154748-56756277
CIL_00091S CIL_00091S_0002 VISTA 12:56158078-56760488
CIL_0007TC CIL_0007TC_0002 VISTA 12:56181967-56783344
CIL_0007XY CIL_0007XY_0002 VISTA 12:56220183-56821029
CIL_00045C CIL_00045C_0002 CGP 12:56611389-56712822
CIL_0000OF CIL_0000OF_0002 CGP 12:56691767-57197472

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IMP RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007492 IMP endoderm development
GO:0009887 TAS organ morphogenesis
GO:0042476 IGI odontogenesis
GO:0042481 IGI regulation of odontogenesis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060325 IGI face morphogenesis
GO:0071363 IDA cellular response to growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331299 SLC25A21-001 protein_coding Homo_sapiens 1e-21 110
ENST00000361487 PAX9-001 protein_coding Homo_sapiens 0 2193
ENST00000398485 PAX1-001 protein_coding Homo_sapiens 0 416
ENST00000402703 PAX9-201 protein_coding Homo_sapiens 0 2193
ENST00000444366 PAX1-002 protein_coding Homo_sapiens 0 416
ENST00000553267 PAX9-004 processed_transcript Homo_sapiens 5e-34 148
ENST00000554201 PAX9-002 protein_coding Homo_sapiens 0 1360
ENST00000555639 PAX9-005 processed_transcript Homo_sapiens 0 468
ENST00000557107 PAX9-003 processed_transcript Homo_sapiens 0 230
ENST00000613128 PAX1-201 protein_coding Homo_sapiens 0 416
ENST00000622765 SLC25A21-201 protein_coding Homo_sapiens 2e-39 169

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