C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001548 Itga3-001 ENSMUSG00000001507 10090 - 11:95044474-95076714 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001548
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001548 6.695±4.51 18.915±4.09 15.837±2.94 4.637±0.44 7.241±3.05 37.989±7.06 2.273±0.69 12.495±3.35 1.367±0.58 73.423±16.80 0.516±0.22 12.428±5.95 29.192±7.88 0.440±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0002 VISTA 11:94580928-95183811
CIL_0007QJ CIL_0007QJ_0002 VISTA 11:95039208-95641127

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0001948 IEA glycoprotein binding
GO:0001968 IEA fibronectin binding
GO:0002020 IEA protease binding
GO:0005178 IEA integrin binding
GO:0005515 IPI protein binding
GO:0005518 IEA collagen binding
GO:0005886 IDA plasma membrane
GO:0005925 IEA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007507 IEA heart development
GO:0007613 IMP memory
GO:0009897 IDA external side of plasma membrane
GO:0009986 IEA cell surface
GO:0010628 IEA positive regulation of gene expression
GO:0010634 IEA positive regulation of epithelial cell migration
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0010976 IEA positive regulation of neuron projection development
GO:0016323 IDA basolateral plasma membrane
GO:0017015 IEA regulation of transforming growth factor beta receptor signaling pathway
GO:0019904 IEA protein domain specific binding
GO:0030111 IEA regulation of Wnt signaling pathway
GO:0030324 IEA lung development
GO:0030426 IEA growth cone
GO:0030510 IEA regulation of BMP signaling pathway
GO:0031345 IEA negative regulation of cell projection organization
GO:0031527 ISS filopodium membrane
GO:0034667 IEA integrin alpha3-beta1 complex
GO:0034698 IEA response to gonadotropin
GO:0035024 IGI negative regulation of Rho protein signal transduction
GO:0035640 IGI exploration behavior
GO:0042493 IEA response to drug
GO:0043235 ISO receptor complex
GO:0043236 IEA laminin binding
GO:0043588 IEA skin development
GO:0044708 IMP single-organism behavior
GO:0045202 IDA synapse
GO:0046982 ISS protein heterodimerization activity
GO:0048333 IEA mesodermal cell differentiation
GO:0048471 IEA perinuclear region of cytoplasm
GO:0060076 IDA excitatory synapse
GO:0060135 IEA maternal process involved in female pregnancy
GO:0070062 IEA extracellular vesicular exosome
GO:0071438 ISS invadopodium membrane
GO:0071944 IEA cell periphery
GO:0072006 IEA nephron development
GO:0090004 ISS positive regulation of establishment of protein localization to plasma membrane
GO:0097060 IDA synaptic membrane
GO:0097062 IGI dendritic spine maintenance
GO:0097205 IEA renal filtration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000007722 ITGA3-020 protein_coding Homo_sapiens 0 3264
ENST00000320031 ITGA3-001 protein_coding Homo_sapiens 0 3783
ENST00000505306 ITGA3-002 retained_intron Homo_sapiens 0 2211
ENST00000505612 ITGA3-013 retained_intron Homo_sapiens 0 370
ENST00000506401 ITGA3-003 nonsense_mediated_decay Homo_sapiens 0 1002
ENST00000506437 ITGA3-006 retained_intron Homo_sapiens 0 673
ENST00000506827 ITGA3-014 protein_coding Homo_sapiens 0 435
ENST00000507771 ITGA3-015 retained_intron Homo_sapiens 0 309
ENST00000508100 ITGA3-009 retained_intron Homo_sapiens 0 444
ENST00000510809 ITGA3-012 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000514834 ITGA3-017 retained_intron Homo_sapiens 0 503
ENST00000554408 RP11-1033H12.3-001 processed_pseudogene Homo_sapiens 0 329
ENST00000570989 ITGA3-019 retained_intron Homo_sapiens 4e-30 137

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