C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor II H, polypeptide 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001565 Gtf2h4-001 ENSMUSG00000001524 10090 - 17:35667730-35673739 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001565 11.257±1.64 6.903±1.39 7.779±1.84 9.176±4.08 7.562±2.88 8.768±1.02 6.626±0.94 7.538±0.50 10.918±2.38 8.869±0.53 7.391±0.53 10.557±3.21 11.139±2.99 10.728±4.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000439 IEA core TFIIH complex
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0004672 ISS protein kinase activity
GO:0005515 IEA protein binding
GO:0005675 ISS holo TFIIH complex
GO:0006200 IEA ATP catabolic process
GO:0006289 IEA nucleotide-excision repair
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006468 IEA protein phosphorylation
GO:0008094 ISS DNA-dependent ATPase activity
GO:0008353 ISS RNA polymerase II carboxy-terminal domain kinase activity
GO:0032508 IEA DNA duplex unwinding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259895 GTF2H4-001 protein_coding Homo_sapiens 0 1923
ENST00000376316 GTF2H4-002 protein_coding Homo_sapiens 0 1973
ENST00000376326 GTF2H4-001 protein_coding Homo_sapiens 0 1923
ENST00000400450 GTF2H4-002 protein_coding Homo_sapiens 0 1973
ENST00000413314 GTF2H4-001 protein_coding Homo_sapiens 0 1923
ENST00000416161 GTF2H4-003 protein_coding Homo_sapiens 0 479
ENST00000416773 GTF2H4-002 protein_coding Homo_sapiens 0 1973
ENST00000423849 GTF2H4-003 protein_coding Homo_sapiens 0 479
ENST00000423881 GTF2H4-002 protein_coding Homo_sapiens 0 1973
ENST00000430576 GTF2H4-003 protein_coding Homo_sapiens 0 484
ENST00000434226 GTF2H4-001 protein_coding Homo_sapiens 0 1923
ENST00000435498 GTF2H4-002 protein_coding Homo_sapiens 0 1973
ENST00000438348 GTF2H4-002 protein_coding Homo_sapiens 0 1973
ENST00000440824 GTF2H4-001 protein_coding Homo_sapiens 0 1929
ENST00000453897 GTF2H4-003 protein_coding Homo_sapiens 0 479
ENST00000454718 GTF2H4-003 protein_coding Homo_sapiens 0 479
ENST00000456195 GTF2H4-003 protein_coding Homo_sapiens 0 479
ENST00000456968 GTF2H4-001 protein_coding Homo_sapiens 0 1923
ENST00000459745 GTF2H4-004 retained_intron Homo_sapiens 0 920
ENST00000459816 GTF2H4-005 retained_intron Homo_sapiens 0 623
ENST00000461964 GTF2H4-006 retained_intron Homo_sapiens 0 385
ENST00000464084 VARSL-002 retained_intron Homo_sapiens 0 1310
ENST00000468446 GTF2H4-005 retained_intron Homo_sapiens 0 623
ENST00000469311 VARS2-002 retained_intron Homo_sapiens 0 1304
ENST00000469489 VARSL-002 retained_intron Homo_sapiens 0 1304
ENST00000469650 GTF2H4-005 retained_intron Homo_sapiens 0 623
ENST00000469920 GTF2H4-006 retained_intron Homo_sapiens 0 385
ENST00000470485 GTF2H4-005 retained_intron Homo_sapiens 0 623
ENST00000472251 GTF2H4-004 retained_intron Homo_sapiens 0 920
ENST00000473009 GTF2H4-006 retained_intron Homo_sapiens 0 385
ENST00000475673 VARS2-002 retained_intron Homo_sapiens 0 1304
ENST00000475845 GTF2H4-005 retained_intron Homo_sapiens 0 623
ENST00000477288 VARS2-002 retained_intron Homo_sapiens 0 1304
ENST00000480149 GTF2H4-004 retained_intron Homo_sapiens 0 920
ENST00000481309 GTF2H4-006 retained_intron Homo_sapiens 0 385
ENST00000483318 GTF2H4-006 retained_intron Homo_sapiens 0 385
ENST00000484029 GTF2H4-004 retained_intron Homo_sapiens 0 920
ENST00000486591 GTF2H4-005 retained_intron Homo_sapiens 0 623
ENST00000487746 GTF2H4-004 retained_intron Homo_sapiens 0 920
ENST00000493326 VARS2-002 retained_intron Homo_sapiens 0 1304
ENST00000494704 GTF2H4-004 retained_intron Homo_sapiens 0 926
ENST00000496881 GTF2H4-006 retained_intron Homo_sapiens 0 385

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