C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal PAS domain protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002053 Npas1-201 ENSMUSG00000001988 10090 - 7:16455721-16476780 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000002053
Transcript ID Adipose Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000002053 0.055±0.00 2.140±0.71 0.109±0.00 0.074±0.03 0.191±0.00 0.038±0.02 0.116±0.03 0.158±0.07 0.089±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0002 VISTA 7:16104746-16706411
CIL_0006BK CIL_0006BK_0002 CGP 7:16452779-16476780
CIL_00062F CIL_00062F_0002 CGP 7:16455721-16614993

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001964 IGI startle response
GO:0003677 IEA DNA binding
GO:0004871 IEA signal transducer activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0042711 IGI maternal behavior
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000439365 NPAS1-004 protein_coding Homo_sapiens 0 523
ENST00000449844 NPAS1-003 protein_coding Homo_sapiens 0 1703
ENST00000594257 NPAS1-008 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000594670 NPAS1-006 protein_coding Homo_sapiens 0 523
ENST00000600352 NPAS1-007 retained_intron Homo_sapiens 0 394
ENST00000601169 NPAS1-005 retained_intron Homo_sapiens 4e-30 135
ENST00000602189 NPAS1-002 protein_coding Homo_sapiens 0 1279
ENST00000602212 NPAS1-001 protein_coding Homo_sapiens 0 1729

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