C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group F, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002466 Nr2f6-001 ENSMUSG00000002393 10090 - 8:71374127-71381960 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002466
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002466 50.477±20.49 91.165±23.30 39.323±6.32 16.262±6.83 63.467±16.13 129.194±8.81 23.526±3.34 90.320±19.93 63.144±36.64 57.815±11.91 8.349±2.93 103.090±40.14 24.054±13.10 4.338±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CI CIL_0007CI_0002 CGP 8:71366848-71379361
CIL_00010P CIL_00010P_0002 CGP 8:71371298-71381960

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0030522 IEA intracellular receptor signaling pathway
GO:0043153 IMP entrainment of circadian clock by photoperiod
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0048666 IMP neuron development
GO:0050965 IMP detection of temperature stimulus involved in sensory perception of pain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000291442 NR2F6-001 protein_coding Homo_sapiens 0 1456
ENST00000596878 NR2F6-002 protein_coding Homo_sapiens 0 351

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