C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase D1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002765 Prkd1-201 ENSMUSG00000002688 10090 - 12:50341231-50649223 protein_coding

Mus musculus EnsemblGRCm38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002765
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002765 5.656±2.01 2.669±0.30 0.780±0.60 1.991±1.05 2.412±0.62 0.676±0.29 1.327±0.46 1.672±0.61 0.179±0.18 2.691±0.90 0.548±0.17 3.430±1.71 0.334±0.09 1.279±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099Q CIL_00099Q_0002 VISTA 12:49819059-50421598
CIL_0008M6 CIL_0008M6_0002 VISTA 12:49821579-50423529
CIL_00094H CIL_00094H_0002 VISTA 12:49857459-50458808
CIL_0008VR CIL_0008VR_0002 VISTA 12:49871735-50472961
CIL_00092M CIL_00092M_0002 VISTA 12:49890555-50491885
CIL_00095N CIL_00095N_0002 VISTA 12:49960206-50561402
CIL_0008C7 CIL_0008C7_0002 VISTA 12:49994630-50596354
CIL_0005EN CIL_0005EN_0002 CGP 12:50341231-51376986

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0001938 IEA positive regulation of endothelial cell proliferation
GO:0004674 IEA protein serine/threonine kinase activity
GO:0004697 IEA protein kinase C activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005802 IDA trans-Golgi network
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005938 IDA cell cortex
GO:0006915 IEA apoptotic process
GO:0006954 IEA inflammatory response
GO:0007030 ISS Golgi organization
GO:0010595 ISS positive regulation of endothelial cell migration
GO:0010837 IMP regulation of keratinocyte proliferation
GO:0010976 ISS positive regulation of neuron projection development
GO:0018105 IEA peptidyl-serine phosphorylation
GO:0032793 IEA positive regulation of CREB transcription factor activity
GO:0033138 IEA positive regulation of peptidyl-serine phosphorylation
GO:0034599 ISS cellular response to oxidative stress
GO:0035924 ISS cellular response to vascular endothelial growth factor stimulus
GO:0038033 IEA positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway
GO:0042802 IEA identical protein binding
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043536 IEA positive regulation of blood vessel endothelial cell migration
GO:0045087 IEA innate immune response
GO:0045669 IMP positive regulation of osteoblast differentiation
GO:0045766 ISS positive regulation of angiogenesis
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048010 IEA vascular endothelial growth factor receptor signaling pathway
GO:0048193 IMP Golgi vesicle transport
GO:0051092 ISS positive regulation of NF-kappaB transcription factor activity
GO:0060548 ISS negative regulation of cell death
GO:1901727 IEA positive regulation of histone deacetylase activity
GO:2001028 IEA positive regulation of endothelial cell chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331968 PRKD1-001 protein_coding Homo_sapiens 0 3825
ENST00000415220 PRKD1-002 protein_coding Homo_sapiens 0 3753
ENST00000468370 PRKD1-003 retained_intron Homo_sapiens 0 628
ENST00000490795 PRKD1-004 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000546371 PRKD1-007 protein_coding Homo_sapiens 0 446
ENST00000547441 PRKD1-005 processed_transcript Homo_sapiens 0 307
ENST00000549503 PRKD1-008 protein_coding Homo_sapiens 0 424
ENST00000551644 PRKD1-006 processed_transcript Homo_sapiens 0 372
ENST00000616995 PRKD1-201 protein_coding Homo_sapiens 0 3808
ENST00000621126 PRKD1-202 protein_coding Homo_sapiens 0 3552

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