C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 3B (BRIGHT-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004780 Arid3b-201 ENSMUSG00000004661 10090 - 9:57790513-57834236 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004780
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004780 0.609±0.01 1.002±0.09 1.431±0.33 1.876±0.95 3.228±0.76 1.575±0.42 0.588±0.07 0.703±0.25 1.442±1.35 2.016±0.70 0.577±0.25 1.060±0.29 8.816±4.01 7.951±3.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000103470 arid3b-201 protein_coding Danio_rerio 0 320
ENST00000346246 ARID3B-001 protein_coding Homo_sapiens 0 1275
ENST00000448213 RP5-837I24.1-001 processed_pseudogene Homo_sapiens 0 1144
ENST00000563567 ARID3B-006 processed_transcript Homo_sapiens 0 193
ENST00000566147 ARID3B-004 protein_coding Homo_sapiens 0 475
ENST00000566468 ARID3B-005 retained_intron Homo_sapiens 0 346
ENST00000569680 ARID3B-002 retained_intron Homo_sapiens 0 806
ENST00000622429 ARID3B-201 protein_coding Homo_sapiens 0 1275

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