C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hyaluronan and proteoglycan link protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005014 Hapln2-001 ENSMUSG00000004894 10090 - 3:88022061-88027478 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyMuscleOvaryPlacentaTestisENSMUST00000005014
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Muscle Ovary Placenta Testis
ENSMUST00000005014 0.065±0.00 0.018±0.00 0.012±0.00 0.117±0.00 0.035±0.01 0.017±0.00 0.018±0.00 0.103±0.01 0.113±0.05 0.035±0.00 1.566±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005540 IEA hyaluronic acid binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007155 IEA cell adhesion
GO:0008065 IMP establishment of blood-nerve barrier
GO:0031012 IDA extracellular matrix
GO:0085029 IMP extracellular matrix assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255039 HAPLN2-001 protein_coding Homo_sapiens 0 1182
ENST00000456112 HAPLN2-004 protein_coding Homo_sapiens 0 651
ENST00000482204 HAPLN2-003 processed_transcript Homo_sapiens 4e-39 167
ENST00000494218 HAPLN2-005 processed_transcript Homo_sapiens 0 689

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