C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: papillary renal cell carcinoma (translocation-associated)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005015 Prcc-001 ENSMUSG00000004895 10090 - 3:87858900-87885608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005015 12.841±2.67 12.938±0.56 12.956±0.20 17.689±3.21 11.590±3.18 15.002±1.67 10.382±1.90 15.063±1.77 10.380±4.46 12.335±1.32 13.963±1.39 15.222±3.65 18.612±6.85 6.721±2.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0007093 IEA mitotic cell cycle checkpoint
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000271526 PRCC-001 protein_coding Homo_sapiens 0 2302
ENST00000454659 PRCC-004 protein_coding Homo_sapiens 0 780
ENST00000459707 PRCC-005 retained_intron Homo_sapiens 0 359
ENST00000469071 PRCC-002 retained_intron Homo_sapiens 0 455
ENST00000473387 PRCC-003 processed_transcript Homo_sapiens 0 540
ENST00000491853 PRCC-006 processed_transcript Homo_sapiens 0 965
ENST00000526188 PRCC-008 protein_coding Homo_sapiens 0 477

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