C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal RNA adenine dimethylase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005016 Rrnad1-001 ENSMUSG00000004896 10090 - 3:87922905-87930144 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungOvaryENSMUST00000005016
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Ovary
ENSMUST00000005016 7.173±1.06 11.539±0.00 6.880±0.77 8.294±1.67 5.531±0.00 4.762±1.52 7.708±1.57 10.364±2.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368216 RRNAD1-001 protein_coding Homo_sapiens 0 1544
ENST00000368218 RRNAD1-007 protein_coding Homo_sapiens 0 734
ENST00000476229 RRNAD1-003 protein_coding Homo_sapiens 0 294
ENST00000484742 RRNAD1-002 protein_coding Homo_sapiens 0 492
ENST00000517871 RRNAD1-013 retained_intron Homo_sapiens 0 392
ENST00000519086 RRNAD1-009 protein_coding Homo_sapiens 0 592
ENST00000522237 RRNAD1-011 protein_coding Homo_sapiens 0 387
ENST00000524343 RRNAD1-008 protein_coding Homo_sapiens 0 309

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