C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005749 Ctr9-001 ENSMUSG00000005609 10090 + 7:111028951-111056377 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005749
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005749 14.781±7.85 3.410±0.36 13.169±1.28 14.671±3.85 9.161±1.06 5.615±1.21 3.256±0.12 7.106±0.23 6.774±3.63 5.204±0.43 3.933±0.17 13.068±3.35 36.539±13.62 11.444±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JB CIL_0004JB_0002 CGP 7:110868266-111056377
CIL_000417 CIL_000417_0003 CGP 7:111028951-111083030

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001711 IMP endodermal cell fate commitment
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007259 IMP JAK-STAT cascade
GO:0010390 IEA histone monoubiquitination
GO:0016055 IEA Wnt signaling pathway
GO:0016593 ISS Cdc73/Paf1 complex
GO:0019827 IMP stem cell maintenance
GO:0032968 ISS positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033523 IEA histone H2B ubiquitination
GO:0035327 IDA transcriptionally active chromatin
GO:0042169 IDA SH2 domain binding
GO:0045638 ISS negative regulation of myeloid cell differentiation
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051571 ISS positive regulation of histone H3-K4 methylation
GO:0070102 IMP interleukin-6-mediated signaling pathway
GO:0071222 IDA cellular response to lipopolysaccharide
GO:0080182 ISS histone H3-K4 trimethylation
GO:2001162 ISS positive regulation of histone H3-K79 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361367 CTR9-001 protein_coding Homo_sapiens 0 4702
ENST00000524523 CTR9-002 protein_coding Homo_sapiens 0 1005
ENST00000526874 CTR9-003 retained_intron Homo_sapiens 0 669
ENST00000529355 CTR9-004 retained_intron Homo_sapiens 0 542
ENST00000529898 CTR9-005 retained_intron Homo_sapiens 0 603

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