C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: orthodenticle homolog 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006071 Otx1-001 ENSMUSG00000005917 10090 - 11:21994764-22001615 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000006071
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000006071 0.021±0.00 0.005±0.00 4.825±3.32 0.013±0.01 0.013±0.00 0.121±0.10 0.009±0.00 0.030±0.04 0.359±0.14 0.115±0.05 0.115±0.10 0.061±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MW CIL_0007MW_0003 UCNEbase 11:21694041-22206768
CIL_00095K CIL_00095K_0002 VISTA 11:21702480-22303824
CIL_00090Q CIL_00090Q_0002 VISTA 11:21710037-22311279
CIL_00084N CIL_00084N_0002 VISTA 11:21768163-22368901
CIL_000976 CIL_000976_0002 VISTA 11:21778416-22379452

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0009952 IGI anterior/posterior pattern specification
GO:0022037 IGI metencephalon development
GO:0030900 IGI forebrain development
GO:0030901 IGI midbrain development
GO:0042472 IGI inner ear morphogenesis
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048852 IGI diencephalon morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282549 OTX1-001 protein_coding Homo_sapiens 0 2154
ENST00000366671 OTX1-002 protein_coding Homo_sapiens 0 2032
ENST00000405984 OTX1-005 nonsense_mediated_decay Homo_sapiens 0 1365
ENST00000476383 OTX1-006 retained_intron Homo_sapiens 4e-29 132
ENST00000477348 OTX1-004 retained_intron Homo_sapiens 9.99995e-41 171
ENST00000484066 OTX1-003 retained_intron Homo_sapiens 0 315

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