C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulocalbin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006128 Rcn1-001 ENSMUSG00000005973 10090 - 2:105386291-105399319 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006128
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006128 17.098±10.71 46.564±34.31 35.480±6.74 13.545±2.63 12.994±9.29 3.566±2.90 3.988±0.40 2.944±0.77 4.563±3.58 21.950±5.98 1.881±0.22 28.701±25.78 14.691±8.21 2.125±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NI CIL_0008NI_0002 VISTA 2:105033715-105635145
CIL_00096J CIL_00096J_0002 VISTA 2:105147292-105748402
CIL_0007PY CIL_0007PY_0002 VISTA 2:105215855-105816711
CIL_0007JA CIL_0007JA_0005 UCNEbase 2:105301487-106575818
CIL_000914 CIL_000914_0002 VISTA 2:105311041-105914025
CIL_00017T CIL_00017T_0002 CGP 2:105386291-105697364

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0043010 IMP camera-type eye development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000054950 RCN1-002 protein_coding Homo_sapiens 0 1240
ENST00000398357 RCN1P2-001 processed_pseudogene Homo_sapiens 0 1107
ENST00000400413 RCN1P1-001 processed_pseudogene Homo_sapiens 0 896
ENST00000527337 RCN1-007 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000530348 RCN1-013 protein_coding Homo_sapiens 0 510
ENST00000531345 RCN1-004 retained_intron Homo_sapiens 0 431
ENST00000532474 RCN1-006 processed_transcript Homo_sapiens 0 377
ENST00000532721 RCN1-005 protein_coding Homo_sapiens 0 344
ENST00000532942 RCN1-001 protein_coding Homo_sapiens 0 941
ENST00000533898 RCN1-003 retained_intron Homo_sapiens 0 955

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