C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006217 Snf8-001 ENSMUSG00000006058 10090 + 11:96034885-96047430 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006217
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006217 12.012±0.75 5.470±1.12 19.851±0.93 35.153±28.60 7.406±2.08 16.503±2.52 7.845±0.65 19.419±2.26 18.617±8.52 9.562±1.40 17.314±3.08 13.684±9.79 39.446±16.63 28.132±3.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005768 IEA endosome
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008134 IEA transcription factor binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0042803 IEA protein homodimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290330 SNF8-002 protein_coding Homo_sapiens 0 1129
ENST00000502492 SNF8-001 protein_coding Homo_sapiens 0 1168
ENST00000504000 SNF8-003 retained_intron Homo_sapiens 0 307
ENST00000507302 SNF8-007 nonsense_mediated_decay Homo_sapiens 0 470
ENST00000509989 SNF8-011 nonsense_mediated_decay Homo_sapiens 0 571
ENST00000509995 SNF8-008 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000510195 SNF8-005 retained_intron Homo_sapiens 0 564
ENST00000510558 SNF8-006 nonsense_mediated_decay Homo_sapiens 0 651
ENST00000512243 SNF8-009 retained_intron Homo_sapiens 0 549
ENST00000514089 SNF8-015 processed_transcript Homo_sapiens 0 488
ENST00000514929 SNF8-004 nonsense_mediated_decay Homo_sapiens 0 660
ENST00000515572 SNF8-012 retained_intron Homo_sapiens 0 488
ENST00000573795 SNF8-017 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000576353 SNF8-016 nonsense_mediated_decay Homo_sapiens 0 651

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