C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000008748 Ubqln4-201 ENSMUSG00000008604 10090 + 3:88553716-88569725 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008748 25.134±4.48 34.715±4.93 13.745±0.99 24.030±7.07 21.922±5.83 23.381±3.50 22.629±2.84 18.603±1.86 16.324±4.01 16.620±2.94 33.181±1.43 30.271±9.34 15.420±4.64 9.803±5.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970
CIL_00064T CIL_00064T_0002 CGP 3:88549819-88569725

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005813 IEA centrosome
GO:0005829 IDA cytosol
GO:0031593 ISS polyubiquitin binding
GO:0031595 ISS nuclear proteasome complex
GO:0031597 ISS cytosolic proteasome complex
GO:0032434 ISS regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042802 IEA identical protein binding
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368309 UBQLN4-001 protein_coding Homo_sapiens 0 2385
ENST00000446233 UBQLN4P2-001 processed_pseudogene Homo_sapiens 0 374
ENST00000459954 UBQLN4-003 retained_intron Homo_sapiens 0 270
ENST00000461599 UBQLN4P1-001 processed_pseudogene Homo_sapiens 0 2226
ENST00000472638 UBQLN4-004 processed_transcript Homo_sapiens 0 457

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