C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 1C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000011623 Dennd1c-201 ENSMUSG00000002668 10090 - 17:57066056-57078510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000011623
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000011623 2.276±0.44 0.950±0.25 2.173±0.06 0.761±0.44 10.735±4.50 1.063±0.41 0.987±0.49 0.832±0.31 1.125±0.92 2.565±1.15 0.187±0.10 0.899±0.35 0.646±0.28 0.088±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QU CIL_0002QU_0002 CGP 17:57059105-57078510
CIL_00061U CIL_00061U_0002 CGP 17:57066056-57087782

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0031410 IEA cytoplasmic vesicle
GO:0032851 ISS positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000381480 DENND1C-001 protein_coding Homo_sapiens 0 1107
ENST00000543576 DENND1C-014 protein_coding Homo_sapiens 0 966
ENST00000586046 DENND1C-015 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000588421 DENND1C-005 protein_coding Homo_sapiens 0 335
ENST00000590173 DENND1C-003 protein_coding Homo_sapiens 0 291
ENST00000590444 DENND1C-009 retained_intron Homo_sapiens 0 422
ENST00000590473 DENND1C-012 protein_coding Homo_sapiens 0 335
ENST00000590818 DENND1C-010 retained_intron Homo_sapiens 0 462
ENST00000590867 DENND1C-002 nonsense_mediated_decay Homo_sapiens 0 950
ENST00000591030 DENND1C-004 processed_transcript Homo_sapiens 0 220
ENST00000592543 DENND1C-011 retained_intron Homo_sapiens 0 409

Loading