C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000014848 Hoxa2-001 ENSMUSG00000014704 10090 - 6:52162511-52164831 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverLungENSMUST00000014848
Transcript ID Brain Heart Liver Lung
ENSMUST00000014848 4.613±3.15 0.622±0.07 0.406±0.17 4.496±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008V2 CIL_0008V2_0002 VISTA 6:51578612-52179694
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003PE CIL_0003PE_0002 CGP 6:52155590-52164831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001709 IMP cell fate determination
GO:0002076 IGI osteoblast development
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007379 IMP segment specification
GO:0007389 IMP pattern specification process
GO:0008045 IMP motor neuron axon guidance
GO:0009952 IMP anterior/posterior pattern specification
GO:0009953 IGI dorsal/ventral pattern formation
GO:0021568 IMP rhombomere 2 development
GO:0021569 IGI rhombomere 3 development
GO:0021658 IMP rhombomere 3 morphogenesis
GO:0035284 IMP brain segmentation
GO:0042474 IGI middle ear morphogenesis
GO:0043565 IDA sequence-specific DNA binding
GO:0045165 IMP cell fate commitment
GO:0045665 IGI negative regulation of neuron differentiation
GO:0045668 IDA negative regulation of osteoblast differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048703 IMP embryonic viscerocranium morphogenesis
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009827 hoxa2b-001 protein_coding Danio_rerio 0 316
ENST00000222718 HOXA2-001 protein_coding Homo_sapiens 0 2172
ENST00000612779 HOXA2-002 retained_intron Homo_sapiens 0 1098

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