C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylglycerophosphate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017859 Pgs1-004 ENSMUSG00000017715 10090 + 11:117986885-118024011 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000017859
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000017859 11.612±2.75 87.003±41.91 7.893±1.89 15.331±2.96 11.021±1.89 5.451±0.00 5.343±0.30 7.468±0.71 5.386±1.91 16.378±2.60 8.407±0.57 10.085±2.96 14.900±5.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_0003UD CIL_0003UD_0003 CGP 11:117966079-118024011
CIL_00062Y CIL_00062Y_0002 CGP 11:117986292-118129219

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262764 PGS1-001 protein_coding Homo_sapiens 0 1644
ENST00000585521 PGS1-009 processed_transcript Homo_sapiens 0 606
ENST00000586019 PGS1-010 protein_coding Homo_sapiens 0 333
ENST00000586325 PGS1-015 processed_transcript Homo_sapiens 0 300
ENST00000586355 PGS1-011 protein_coding Homo_sapiens 0 418
ENST00000586510 PGS1-016 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000587356 PGS1-014 protein_coding Homo_sapiens 0 619
ENST00000588169 PGS1-005 nonsense_mediated_decay Homo_sapiens 0 1147
ENST00000588281 PGS1-007 processed_transcript Homo_sapiens 0 1038
ENST00000589425 PGS1-002 nonsense_mediated_decay Homo_sapiens 0 732
ENST00000589426 PGS1-004 nonsense_mediated_decay Homo_sapiens 0 1522
ENST00000589689 PGS1-003 protein_coding Homo_sapiens 0 926
ENST00000591996 PGS1-008 retained_intron Homo_sapiens 0 614
ENST00000592043 PGS1-006 protein_coding Homo_sapiens 0 1168

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