C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018755 Pdlim4-001 ENSMUSG00000020388 10090 - 11:54054928-54069014 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018755 58.158±35.99 37.524±4.54 55.074±0.55 9.870±4.32 36.170±7.14 38.143±4.07 18.798±2.08 5.576±0.51 1.709±0.90 9.625±0.78 2.719±0.71 135.292±39.09 12.965±3.75 2.087±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253754 PDLIM4-001 protein_coding Homo_sapiens 0 1109
ENST00000379018 PDLIM4-002 protein_coding Homo_sapiens 0 719
ENST00000418373 PDLIM4-004 protein_coding Homo_sapiens 0 420
ENST00000462597 PDLIM4-006 retained_intron Homo_sapiens 0 315
ENST00000463615 PDLIM4-007 retained_intron Homo_sapiens 0 403
ENST00000474421 PDLIM4-003 retained_intron Homo_sapiens 3e-38 163
ENST00000484620 PDLIM4-005 processed_transcript Homo_sapiens 0 364

Loading