C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear distribution gene E-like homolog 1 (A. nidulans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018880 Ndel1-001 ENSMUSG00000018736 10090 - 11:68821434-68853135 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018880
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018880 14.632±2.81 52.019±2.75 21.983±2.79 18.335±5.08 13.673±1.24 19.207±7.50 8.485±1.06 28.967±3.95 16.500±4.22 21.115±5.47 8.272±5.93 23.378±4.78 23.825±10.53 33.376±15.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088C CIL_00088C_0002 VISTA 11:68323475-68924174
CIL_0009AZ CIL_0009AZ_0002 VISTA 11:68337699-68940744
CIL_0002AE CIL_0002AE_0002 CGP 11:68821434-68895777

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IGI microtubule cytoskeleton organization
GO:0000776 IEA kinetochore
GO:0001764 IGI neuron migration
GO:0001833 IMP inner cell mass cell proliferation
GO:0005515 IPI protein binding
GO:0005635 ISS nuclear envelope
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005815 IGI microtubule organizing center
GO:0005871 IEA kinesin complex
GO:0005874 IEA microtubule
GO:0005875 IDA microtubule associated complex
GO:0006508 IEA proteolysis
GO:0007059 IEA chromosome segregation
GO:0007100 IGI mitotic centrosome separation
GO:0008017 IDA microtubule binding
GO:0008090 IDA retrograde axon cargo transport
GO:0010975 IMP regulation of neuron projection development
GO:0016477 IMP cell migration
GO:0021799 IMP cerebral cortex radially oriented cell migration
GO:0021955 IMP central nervous system neuron axonogenesis
GO:0030424 IDA axon
GO:0031175 IEA neuron projection development
GO:0031252 IDA cell leading edge
GO:0032403 IEA protein complex binding
GO:0032864 IDA activation of Cdc42 GTPase activity
GO:0043014 IDA alpha-tubulin binding
GO:0043203 IDA axon hillock
GO:0044297 IEA cell body
GO:0045773 IEA positive regulation of axon extension
GO:0047496 IGI vesicle transport along microtubule
GO:0048487 IDA beta-tubulin binding
GO:0048680 IEA positive regulation of axon regeneration
GO:0051081 ISS nuclear envelope disassembly
GO:0051642 IMP centrosome localization
GO:0060052 IMP neurofilament cytoskeleton organization
GO:0060053 IDA neurofilament cytoskeleton
GO:0070012 IEA oligopeptidase activity
GO:1990138 IGI neuron projection extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334527 NDEL1-001 protein_coding Homo_sapiens 0 2745
ENST00000380025 NDEL1-003 protein_coding Homo_sapiens 0 1358
ENST00000402554 NDEL1-002 protein_coding Homo_sapiens 0 1469
ENST00000450604 RP13-313G19.2-001 processed_pseudogene Homo_sapiens 0 819
ENST00000578172 NDEL1-005 retained_intron Homo_sapiens 0 1210
ENST00000579880 NDEL1-009 processed_transcript Homo_sapiens 0 401
ENST00000580012 NDEL1-014 protein_coding Homo_sapiens 0 324
ENST00000580237 NDEL1-010 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000580738 NDEL1-017 retained_intron Homo_sapiens 0 577
ENST00000581189 NDEL1-015 processed_transcript Homo_sapiens 0 536
ENST00000581679 NDEL1-006 protein_coding Homo_sapiens 0 438
ENST00000582277 NDEL1-018 protein_coding Homo_sapiens 0 566
ENST00000582490 NDEL1-013 protein_coding Homo_sapiens 0 388
ENST00000582665 NDEL1-011 protein_coding Homo_sapiens 0 785
ENST00000582812 NDEL1-007 protein_coding Homo_sapiens 0 732
ENST00000583066 NDEL1-016 processed_transcript Homo_sapiens 3.00004e-41 172
ENST00000583683 NDEL1-004 retained_intron Homo_sapiens 0 1199
ENST00000584866 NDEL1-012 protein_coding Homo_sapiens 0 198
ENST00000585098 NDEL1-019 protein_coding Homo_sapiens 0 505

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