C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019050 P4ha2-002 ENSMUSG00000018906 10090 + 11:54100963-54131652 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019050 4.106±1.31 1.252±0.37 4.057±0.11 2.333±2.23 3.106±1.14 1.479±0.88 7.163±1.20 2.118±0.57 0.826±0.56 4.361±0.77 5.730±0.93 2.761±1.22 25.767±10.79 0.913±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004656 IDA procollagen-proline 4-dioxygenase activity
GO:0005506 IEA iron ion binding
GO:0005515 IPI protein binding
GO:0005581 IEA collagen trimer
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0016222 IDA procollagen-proline 4-dioxygenase complex
GO:0016702 IEA oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0018401 IDA peptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0031418 IEA L-ascorbic acid binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000166534 P4HA2-003 protein_coding Homo_sapiens 0 1834
ENST00000360568 P4HA2-002 protein_coding Homo_sapiens 0 1724
ENST00000379086 P4HA2-004 protein_coding Homo_sapiens 0 1724
ENST00000379100 P4HA2-201 protein_coding Homo_sapiens 0 1724
ENST00000379104 P4HA2-202 protein_coding Homo_sapiens 0 1834
ENST00000395164 P4HA2-017 protein_coding Homo_sapiens 0 580
ENST00000401867 P4HA2-001 protein_coding Homo_sapiens 0 1834
ENST00000416053 P4HA2-011 protein_coding Homo_sapiens 0 359
ENST00000417528 P4HA2-010 protein_coding Homo_sapiens 0 713
ENST00000418055 P4HA2-016 protein_coding Homo_sapiens 0 387
ENST00000428369 P4HA2-009 protein_coding Homo_sapiens 0 503
ENST00000431054 P4HA2-014 protein_coding Homo_sapiens 0 713
ENST00000439698 P4HA2-015 protein_coding Homo_sapiens 0 643
ENST00000453286 P4HA2-005 protein_coding Homo_sapiens 0 525
ENST00000467587 P4HA2-008 retained_intron Homo_sapiens 0 265
ENST00000474628 P4HA2-007 retained_intron Homo_sapiens 0 237
ENST00000478055 P4HA2-006 retained_intron Homo_sapiens 0 215

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